Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   V9W64_RS05785 Genome accession   NZ_CP146598
Coordinates   1247273..1248508 (-) Length   411 a.a.
NCBI ID   WP_274585303.1    Uniprot ID   A0A9X4E242
Organism   Neisseria leonii strain 51.81     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1242273..1253508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W64_RS05745 (V9W64_05745) pxpB 1242357..1243010 (-) 654 WP_274585298.1 5-oxoprolinase subunit PxpB -
  V9W64_RS05750 (V9W64_05750) - 1243152..1243550 (-) 399 WP_274585299.1 helix-turn-helix domain-containing protein -
  V9W64_RS05755 (V9W64_05755) - 1243655..1244314 (+) 660 WP_274585300.1 NAD(P)-dependent oxidoreductase -
  V9W64_RS05760 (V9W64_05760) - 1244482..1244823 (-) 342 WP_338691419.1 gamma-glutamyltransferase -
  V9W64_RS05765 (V9W64_05765) - 1244807..1244989 (-) 183 Protein_1118 gamma-glutamyltransferase -
  V9W64_RS05770 (V9W64_05770) - 1245026..1245175 (-) 150 WP_274585301.1 hypothetical protein -
  V9W64_RS05775 (V9W64_05775) - 1245391..1246110 (-) 720 WP_274585327.1 fumarylacetoacetate hydrolase family protein -
  V9W64_RS05780 (V9W64_05780) - 1246192..1246929 (-) 738 WP_274585302.1 dienelactone hydrolase family protein -
  V9W64_RS05785 (V9W64_05785) pilA 1247273..1248508 (-) 1236 WP_274585303.1 signal recognition particle-docking protein FtsY Machinery gene
  V9W64_RS05790 (V9W64_05790) - 1248633..1249319 (-) 687 WP_274585304.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  V9W64_RS05800 (V9W64_05800) cyaY 1249842..1250171 (-) 330 WP_274572474.1 iron donor protein CyaY -
  V9W64_RS05805 (V9W64_05805) - 1250237..1250431 (+) 195 WP_274585305.1 lipoprotein -
  V9W64_RS05810 (V9W64_05810) lysA 1250428..1251651 (+) 1224 WP_274585306.1 diaminopimelate decarboxylase -
  V9W64_RS05815 (V9W64_05815) - 1252026..1252619 (-) 594 WP_274585328.1 outer membrane lipoprotein carrier protein LolA -
  V9W64_RS05820 (V9W64_05820) - 1252656..1253093 (-) 438 WP_274585307.1 thioesterase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 43751.68 Da        Isoelectric Point: 4.8114

>NTDB_id=943263 V9W64_RS05785 WP_274585303.1 1247273..1248508(-) (pilA) [Neisseria leonii strain 51.81]
MFGLFKRRPQPEEEAAQTAQRPSETNPLLMPQETGEEPQYLSEIVQPSAEGGAEAESTPPPAENAAGTAVPHGETAAVQA
ETPIAPPAYHGHTAENPVSAGQPAEAEKTGWAARLKQGLSKSRNQMAKSLAGVFGGGKIDEALYEELETVLLTGDMGIEA
TERLMDEVRRRVSLKGLRDGAELRQALKDALYDLLEPLQSPLRLPDDGRPFVIMMAGINGAGKTTSIGKLAKYFQQQGKS
VVLAAGDTFRAAAREQLQEWGRRNGVTVISQAKGDSAAVCFDAVEAAKARGIDVVLADTAGRLPTQLHLMEEIKKVKRVL
QKTMPDAPHEIMVVLDANIGQNAVNQVIAFDDALGVTGLIVTKLDGTAKGGVLAALASARPIPVRYIGVGEGIDDLRPFD
ARAFVDALIED

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=943263 V9W64_RS05785 WP_274585303.1 1247273..1248508(-) (pilA) [Neisseria leonii strain 51.81]
ATGTTCGGATTGTTCAAACGCCGCCCGCAACCGGAGGAAGAGGCCGCCCAAACGGCGCAGAGGCCGTCTGAAACCAACCC
CCTCTTGATGCCGCAGGAAACCGGGGAAGAGCCGCAATATTTGAGCGAGATTGTCCAACCTTCGGCAGAGGGCGGGGCAG
AGGCGGAAAGTACGCCGCCTCCTGCCGAAAATGCAGCCGGTACAGCCGTGCCGCACGGAGAGACGGCTGCCGTTCAGGCA
GAAACGCCGATTGCGCCGCCGGCATACCATGGCCATACGGCGGAAAATCCGGTATCGGCCGGGCAGCCTGCCGAAGCGGA
AAAAACCGGGTGGGCGGCGCGCCTGAAACAGGGATTGAGCAAATCGCGCAACCAGATGGCCAAATCGCTGGCCGGTGTGT
TCGGCGGCGGCAAAATCGACGAAGCCTTATATGAAGAGCTGGAAACCGTCCTGCTCACAGGCGACATGGGCATCGAAGCG
ACCGAACGGCTGATGGACGAAGTGCGCCGCCGCGTATCGCTCAAAGGCCTGCGCGACGGTGCTGAACTGCGCCAAGCCCT
GAAAGACGCGCTTTATGATTTGCTCGAACCCTTGCAGTCGCCCCTGCGGCTGCCCGACGACGGCCGCCCGTTCGTCATCA
TGATGGCGGGCATCAACGGCGCGGGCAAAACCACGTCTATCGGCAAGTTGGCGAAATATTTCCAGCAGCAGGGCAAAAGC
GTGGTGCTGGCGGCGGGCGACACCTTCCGTGCGGCGGCGCGCGAGCAGTTGCAGGAATGGGGGCGGCGCAACGGCGTAAC
CGTGATTTCGCAGGCCAAAGGCGATTCGGCGGCCGTCTGTTTCGATGCGGTCGAAGCGGCCAAGGCGCGCGGTATCGATG
TGGTGCTGGCCGACACGGCCGGCCGACTGCCCACCCAGCTGCATTTGATGGAAGAGATTAAAAAAGTCAAACGCGTATTG
CAGAAAACCATGCCCGACGCGCCGCATGAAATCATGGTGGTGCTCGATGCCAACATCGGCCAGAACGCGGTCAACCAAGT
CATCGCGTTTGATGATGCTCTGGGCGTAACCGGCCTGATTGTGACCAAGCTCGACGGCACGGCCAAAGGCGGCGTATTGG
CCGCGCTGGCTTCCGCCCGACCGATTCCCGTGCGCTACATCGGCGTGGGCGAGGGCATAGACGATTTGCGCCCCTTTGAT
GCCCGCGCTTTTGTCGATGCGCTGATTGAGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(210-409)

SRP54-type protein, helical bundle domain (SRP54_N)

(126-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

67.133

100

0.701