Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V9W64_RS00650 Genome accession   NZ_CP146598
Coordinates   133123..133926 (+) Length   267 a.a.
NCBI ID   WP_274584216.1    Uniprot ID   A0A9X4E173
Organism   Neisseria leonii strain 51.81     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128123..138926
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V9W64_RS00635 (V9W64_00635) prfA 130351..131427 (+) 1077 WP_274584214.1 peptide chain release factor 1 -
  V9W64_RS00640 (V9W64_00640) greB 131431..131919 (+) 489 WP_274571479.1 transcription elongation factor GreB -
  V9W64_RS00645 (V9W64_00645) rluD 132003..133124 (-) 1122 WP_274584215.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V9W64_RS00650 (V9W64_00650) comL 133123..133926 (+) 804 WP_274584216.1 outer membrane protein assembly factor BamD Machinery gene
  V9W64_RS00655 (V9W64_00655) - 134484..135203 (-) 720 WP_274584217.1 hypothetical protein -
  V9W64_RS00660 (V9W64_00660) - 135280..135528 (+) 249 WP_274571475.1 hypothetical protein -
  V9W64_RS00665 (V9W64_00665) - 135601..136392 (+) 792 WP_274584218.1 basic amino acid ABC transporter substrate-binding protein -
  V9W64_RS00670 (V9W64_00670) - 136844..138142 (-) 1299 WP_274584219.1 adenylosuccinate synthase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31033.04 Da        Isoelectric Point: 7.9380

>NTDB_id=943252 V9W64_RS00650 WP_274584216.1 133123..133926(+) (comL) [Neisseria leonii strain 51.81]
MKKILLVAALSVILGGCANTGTADKDAQITQDWPVERLYAEAQDELNSNNYTRAIKLYELLESRFPQGRFAQQAQLDTAY
AYYKDEEQAKALAAIERFQRLHPQHPSMDYALYLKGLVLFNEDQSFLNRLASQDWSDRDPQANRDAYRAFAELIQRYPDS
RYVPDATERMGKLVDALAGNEISIARYYARRGAYLAAAKRAQNILQNFRNTRFVEESLAIMVFSYQKMGRTQLADDTRRI
LAQNFPQSPFLEKEWSSEIIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=943252 V9W64_RS00650 WP_274584216.1 133123..133926(+) (comL) [Neisseria leonii strain 51.81]
ATGAAAAAAATTCTTTTAGTTGCCGCGTTAAGCGTGATTTTGGGCGGTTGCGCCAATACCGGTACAGCCGATAAAGATGC
GCAGATTACCCAAGACTGGCCTGTGGAACGCCTGTACGCCGAAGCGCAAGACGAGCTGAACAGTAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTGGAATCGCGCTTCCCGCAAGGCCGCTTTGCCCAGCAGGCCCAGCTGGATACTGCTTAT
GCGTATTATAAAGACGAAGAACAGGCCAAAGCCTTGGCTGCCATCGAACGCTTCCAGCGTCTGCACCCGCAACACCCGAG
CATGGATTATGCTTTGTATCTCAAAGGCTTGGTATTGTTCAATGAGGATCAGTCTTTCTTAAACCGTCTGGCCTCTCAGG
ACTGGTCCGACCGCGACCCGCAGGCCAACCGCGATGCTTACCGTGCGTTTGCCGAGCTGATCCAGCGTTATCCCGACAGC
AGATACGTTCCCGATGCCACCGAGCGCATGGGTAAACTGGTCGATGCTCTGGCCGGTAACGAAATCTCGATTGCCCGCTA
TTATGCCCGTCGCGGAGCCTATCTGGCAGCAGCCAAACGCGCTCAAAACATCCTGCAGAACTTCCGCAATACCCGTTTTG
TCGAAGAGTCGCTGGCAATTATGGTGTTTTCGTATCAAAAAATGGGACGTACCCAATTGGCTGACGACACCCGCCGTATT
CTGGCGCAAAACTTCCCGCAAAGCCCGTTCTTGGAAAAAGAATGGTCGTCGGAAATCATTCCGTGGTGGCGTTACTGGAA
ATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

71.805

99.625

0.715
  comL Neisseria gonorrhoeae MS11

71.805

99.625

0.715