Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   R8902_RS05875 Genome accession   NZ_AP028388
Coordinates   1140245..1140739 (+) Length   164 a.a.
NCBI ID   WP_002860433.1    Uniprot ID   Q5HTR6
Organism   Campylobacter jejuni strain BCH-11399     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1135245..1145739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8902_RS05860 (B11399_11480) - 1136631..1137809 (-) 1179 WP_002858139.1 metal-dependent hydrolase -
  R8902_RS05865 (B11399_11490) gpsA 1137819..1138715 (-) 897 WP_075888380.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  R8902_RS05870 (B11399_11500) gatB 1138712..1140130 (-) 1419 WP_002868575.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  R8902_RS05875 (B11399_11510) luxS 1140245..1140739 (+) 495 WP_002860433.1 S-ribosylhomocysteine lyase Regulator
  R8902_RS05880 (B11399_11520) - 1141051..1142043 (+) 993 WP_057098359.1 isopenicillin N synthase family dioxygenase -
  R8902_RS05885 (B11399_11530) - 1142053..1142823 (+) 771 WP_057098360.1 MetQ/NlpA family ABC transporter substrate-binding protein -
  R8902_RS05890 (B11399_11540) metE 1142846..1145110 (+) 2265 WP_057098361.1 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18271.22 Da        Isoelectric Point: 6.3290

>NTDB_id=94287 R8902_RS05875 WP_002860433.1 1140245..1140739(+) (luxS) [Campylobacter jejuni strain BCH-11399]
MPLLDSFKVDHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCIPNKDIMSEKGTHTLEHLFAGFMRDHLNSNSVEIIDISP
MGCRTGFYMSLIGTPDEKSVAKAWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
LENA

Nucleotide


Download         Length: 495 bp        

>NTDB_id=94287 R8902_RS05875 WP_002860433.1 1140245..1140739(+) (luxS) [Campylobacter jejuni strain BCH-11399]
ATGCCATTATTAGACAGCTTTAAAGTTGACCATACTAAAATGCCAGCTCCTGCTGTGCGTTTAGCTAAAGTTATGAAAAC
ACCTAAGGGTGATGATATTAGCGTGTTTGATTTGCGTTTTTGTATACCAAATAAAGACATTATGAGCGAAAAAGGTACAC
ATACCTTAGAACATTTATTTGCAGGATTTATGAGAGATCATCTTAATTCAAATTCAGTTGAAATTATTGATATTTCACCT
ATGGGTTGTCGCACGGGTTTTTATATGAGTTTAATTGGAACACCAGATGAAAAAAGTGTTGCAAAAGCTTGGGAAGAAGC
TATGAAAGATGTTTTAAGCGTAAGCGATCAAAGCAAAATTCCTGAACTTAATATCTATCAATGCGGAACTTGCGCAATGC
ATTCTTTAGATGAAGCCAAACAAATTGCCCAAAAGGTTTTAAATCTAGGTATTAGCATAATGAATAACAAAGAATTAAAA
CTCGAGAATGCTTAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5HTR6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

72.05

98.171

0.707

Multiple sequence alignment