Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V8V48_RS09395 Genome accession   NZ_CP146481
Coordinates   1958671..1959234 (-) Length   187 a.a.
NCBI ID   WP_326007559.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain MS1     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1953671..1964234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V48_RS09365 (V8V48_09355) - 1954354..1955292 (+) 939 WP_029379118.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  V8V48_RS09370 (V8V48_09360) - 1955366..1955935 (-) 570 WP_412486918.1 GNAT family N-acetyltransferase -
  V8V48_RS09375 (V8V48_09365) - 1956116..1956328 (+) 213 WP_029379120.1 TM2 domain-containing protein -
  V8V48_RS09380 (V8V48_09370) isaB 1956899..1957390 (-) 492 WP_412486919.1 immunodominant staphylococcal antigen IsaB family protein -
  V8V48_RS09395 (V8V48_09385) comK/comK1 1958671..1959234 (-) 564 WP_326007559.1 competence protein ComK Regulator
  V8V48_RS09400 (V8V48_09390) - 1959487..1959705 (+) 219 WP_029379123.1 IDEAL domain-containing protein -
  V8V48_RS09405 (V8V48_09395) - 1959805..1960791 (-) 987 WP_029379124.1 lipoate--protein ligase -
  V8V48_RS09410 (V8V48_09400) - 1960991..1961176 (+) 186 WP_002483735.1 YkvS family protein -
  V8V48_RS09415 (V8V48_09405) - 1961182..1961784 (+) 603 WP_029379125.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  V8V48_RS09420 (V8V48_09410) - 1961851..1963359 (-) 1509 WP_029379126.1 bifunctional metallophosphatase/5'-nucleotidase -

Sequence

Protein


Download         Length: 187 a.a.        Molecular weight: 21916.29 Da        Isoelectric Point: 9.5362

>NTDB_id=942854 V8V48_RS09395 WP_326007559.1 1958671..1959234(-) (comK/comK1) [Staphylococcus xylosus strain MS1]
MIQPYIIKKGDMVLQPCNLATGHYEGSYLLRYKADSQIIKERVSKIIDRSCRFYGSSYVFKKEDTMRITGISSKPPILFT
PLFPTYFFPTHSDRKVDNTWINIHYVHNIRPLKEKKCKVTFVDNQSIVANISAHSMHHQYLNGIYYYYMMDRAARVATFD
PDSPIDYTKPQLNIYEALAKYSLFESK

Nucleotide


Download         Length: 564 bp        

>NTDB_id=942854 V8V48_RS09395 WP_326007559.1 1958671..1959234(-) (comK/comK1) [Staphylococcus xylosus strain MS1]
ATGATTCAACCATATATTATTAAAAAAGGTGATATGGTTTTACAACCATGCAATTTAGCTACTGGACATTATGAAGGTAG
TTACTTGCTAAGGTATAAAGCCGACAGTCAAATTATTAAAGAACGAGTATCAAAAATAATCGACCGTTCATGTAGGTTTT
ATGGTAGCAGTTATGTATTTAAAAAAGAAGATACCATGCGTATTACAGGTATAAGCAGTAAGCCACCCATTCTATTCACT
CCATTATTTCCCACTTATTTCTTTCCCACACACTCTGATCGTAAAGTAGATAATACCTGGATTAATATCCATTATGTACA
TAATATTAGACCACTTAAAGAAAAGAAATGTAAGGTTACTTTTGTAGATAATCAAAGTATTGTAGCTAACATTTCTGCTC
ATAGCATGCATCATCAATATTTAAATGGTATATATTATTATTACATGATGGATAGGGCAGCAAGAGTCGCTACATTTGAT
CCTGATTCGCCAATTGATTATACTAAACCACAATTAAATATATATGAAGCGTTGGCTAAATATTCGTTGTTTGAATCGAA
ATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

55.191

97.861

0.54
  comK/comK1 Staphylococcus aureus N315

55.191

97.861

0.54