Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V8V48_RS04220 Genome accession   NZ_CP146481
Coordinates   909638..910057 (+) Length   139 a.a.
NCBI ID   WP_029377976.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain MS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 904638..915057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V48_RS04190 (V8V48_04190) atpD 904681..906093 (+) 1413 WP_029377979.1 F0F1 ATP synthase subunit beta -
  V8V48_RS04195 (V8V48_04195) - 906113..906517 (+) 405 WP_017722095.1 F0F1 ATP synthase subunit epsilon -
  V8V48_RS04200 (V8V48_04200) - 906857..907090 (+) 234 WP_017722096.1 DUF1146 family protein -
  V8V48_RS04205 (V8V48_04205) murA 907197..908462 (+) 1266 WP_029377978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V8V48_RS04210 (V8V48_04210) fabZ 908520..908957 (+) 438 WP_029377977.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V8V48_RS04215 (V8V48_04215) - 909007..909447 (-) 441 WP_017722099.1 YwpF-like family protein -
  V8V48_RS04220 (V8V48_04220) ssb 909638..910057 (+) 420 WP_029377976.1 single-stranded DNA-binding protein Machinery gene
  V8V48_RS04225 (V8V48_04225) - 910484..911179 (+) 696 WP_029377975.1 transglycosylase family protein -
  V8V48_RS04230 (V8V48_04230) tenA 911621..912301 (+) 681 WP_042362325.1 thiaminase II -
  V8V48_RS04235 (V8V48_04235) thiD 912303..913124 (+) 822 WP_029377973.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V8V48_RS04240 (V8V48_04240) thiM 913117..913905 (+) 789 WP_038678895.1 hydroxyethylthiazole kinase -
  V8V48_RS04245 (V8V48_04245) thiE 913908..914546 (+) 639 WP_037557147.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16163.58 Da        Isoelectric Point: 6.4617

>NTDB_id=942835 V8V48_RS04220 WP_029377976.1 909638..910057(+) (ssb) [Staphylococcus xylosus strain MS1]
MINNIVIVGRLTKDPKIYEKEGNKLATMCVAITRNYKDKDQNTICDYLYCKAVGKIANNIELYLNKGSLVGITGQMQSRK
YEKEGQMHFVSELFIETIRFMSPRSKDEVNEFHEIFPIEQVCNSNKEKNLQDNEIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=942835 V8V48_RS04220 WP_029377976.1 909638..910057(+) (ssb) [Staphylococcus xylosus strain MS1]
ATGATTAACAACATTGTCATAGTAGGGAGATTAACCAAAGACCCTAAAATTTATGAAAAGGAGGGGAATAAATTAGCTAC
AATGTGTGTAGCGATAACAAGAAATTATAAAGATAAGGATCAAAATACTATTTGTGATTATCTCTATTGTAAGGCAGTTG
GTAAAATAGCTAATAATATCGAACTATATTTAAATAAAGGATCACTTGTGGGTATCACTGGTCAAATGCAATCACGAAAA
TATGAAAAAGAAGGGCAGATGCATTTTGTATCGGAACTTTTTATTGAAACGATTAGATTTATGTCTCCGAGAAGCAAAGA
TGAAGTTAATGAATTTCATGAAATATTCCCTATAGAGCAAGTTTGTAATTCTAATAAAGAAAAAAATTTACAAGATAATG
AAATATATGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

66.355

76.978

0.511
  ssb Staphylococcus aureus MW2

65.421

76.978

0.504