Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   V8V48_RS00295 Genome accession   NZ_CP146481
Coordinates   66384..68012 (-) Length   542 a.a.
NCBI ID   WP_412486967.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain MS1     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 65572..74235 66384..68012 within 0


Gene organization within MGE regions


Location: 65572..74235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V8V48_RS00290 (V8V48_00290) - 65572..65913 (-) 342 WP_073505265.1 SAUGI family uracil-DNA glycosylase inhibitor -
  V8V48_RS00295 (V8V48_00295) ccrB 66384..68012 (-) 1629 WP_412486967.1 cassette chromosome recombinase CcrB Machinery gene
  V8V48_RS00300 (V8V48_00300) ccrA 68032..69381 (-) 1350 WP_412486968.1 cassette chromosome recombinase CcrA Machinery gene
  V8V48_RS00305 (V8V48_00305) - 69552..69815 (-) 264 WP_119646829.1 hypothetical protein -
  V8V48_RS00310 (V8V48_00310) cch1 69881..71671 (-) 1791 WP_326034063.1 cassette chromosome replicative helicase -
  V8V48_RS00315 (V8V48_00315) - 71797..73224 (-) 1428 WP_412486969.1 DUF6038 family protein -
  V8V48_RS00320 (V8V48_00320) - 73485..73703 (+) 219 Protein_61 FAD-binding dehydrogenase -
  V8V48_RS00325 (V8V48_00325) - 73888..74235 (-) 348 WP_075100229.1 MerR family transcriptional regulator -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62297.29 Da        Isoelectric Point: 10.0371

>NTDB_id=942830 V8V48_RS00295 WP_412486967.1 66384..68012(-) (ccrB) [Staphylococcus xylosus strain MS1]
MQQLKQKRVGIYVRVSTEMQSTEGYSIDGQINQIREYCDFNNFAVVDVYADRGISGKSMNRPELQRLLKDANEGQIDSVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYGKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKNKPFSIGSVTYILSNPFYIGKIQFAK
YKDWNEKRRKGLNDNPVIANGKHSPIISQELWDKVQARKKQVSKKPQVHGKGTNILTGLISCPKCSASMSASTTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVINQVVERVNKGKQVDIAALNHDIAYKQQQFN
KVHAKLDNLVKTVEDNPDLTSALKETIHQYEKQMTDISKQINLLKQKQNEDKSSYDTKQLSVLLRRIFQNIESMDKTQIK
ALFLTIIDHIDIRKDSNHKKQFYVTLKLNNDIIKQLFNNSPLDEVLLSTSSLFLPQTLYFQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=942830 V8V48_RS00295 WP_412486967.1 66384..68012(-) (ccrB) [Staphylococcus xylosus strain MS1]
ATGCAACAACTTAAACAAAAACGTGTCGGTATTTATGTCCGTGTATCAACAGAAATGCAAAGTACTGAAGGATATAGTAT
CGATGGACAAATCAATCAAATTCGAGAATATTGTGATTTCAATAACTTTGCTGTTGTAGATGTATACGCGGATAGAGGTA
TTTCTGGAAAATCTATGAACCGACCAGAACTACAACGTTTGTTAAAAGATGCGAACGAAGGTCAGATCGATTCTGTTATG
GTCTACAAAACAAACCGACTAGCACGTAACACTTCTGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAGCGTATGGAAGTCAATACAAGCAGTGGTAAATTGATGTTACAAATTCTAGCGAGTTTTTCAG
AATTTGAAAGAAATAATATTGTCGAGAATGTATTCATGGGACAAACTCGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCATTAGGCTATGGTAAGATACCAGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAATATCGTTAAATA
CATCTTTGAATCATATGCGAAAGGACATGGATATCGTAAAATTGCTAATGCTCTCAATCATAAAGGTTATGTCACTAAAA
AAAACAAACCATTCAGTATTGGTTCAGTGACCTATATCTTATCTAATCCATTCTATATTGGTAAAATTCAATTTGCCAAA
TACAAAGATTGGAATGAAAAACGTCGTAAGGGATTAAATGATAATCCAGTAATTGCTAATGGAAAGCACTCCCCTATCAT
TAGTCAAGAGCTGTGGGATAAAGTACAAGCTCGTAAGAAGCAAGTCAGCAAAAAACCACAAGTTCATGGTAAAGGGACAA
ATATTTTAACTGGGTTAATTTCGTGTCCAAAATGTTCTGCTTCTATGTCTGCGAGCACGACAACCAATACACTTAAAGAT
GGTACAAAAAAGCGAATACGCTATTATTCCTGTAGTAATTTTCGCAACAAAGGATCGAAAGTGTGTTCTGCAAATAGTGT
AAGGGCAGATGTCATAGAAAAATATGTCATGGATCAAATACTCGAAATTGTCAAAAGTGATAAGGTCATCAACCAAGTCG
TAGAACGTGTCAATAAAGGGAAGCAAGTCGATATAGCTGCACTTAACCATGATATCGCTTATAAGCAACAACAATTCAAT
AAAGTTCATGCAAAACTAGATAATCTGGTTAAAACAGTTGAAGATAACCCTGACCTTACATCTGCGCTGAAAGAAACAAT
CCATCAATATGAAAAGCAAATGACTGATATTTCAAAGCAAATCAATCTACTCAAACAAAAACAAAATGAAGATAAGTCAT
CTTATGATACAAAGCAATTATCTGTACTATTACGACGTATATTTCAAAATATAGAATCTATGGACAAAACACAAATCAAA
GCATTATTTCTTACCATTATTGACCATATTGATATTCGAAAAGATAGTAATCATAAAAAGCAATTCTATGTCACACTGAA
ACTCAATAATGACATCATTAAACAACTTTTCAATAATTCTCCACTCGACGAAGTGCTTCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(302-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

82.103

100

0.821