Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   V6986_RS11000 Genome accession   NZ_CP146358
Coordinates   2201579..2203312 (-) Length   577 a.a.
NCBI ID   WP_107163375.1    Uniprot ID   -
Organism   Bacillus safensis strain yw6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2196579..2208312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS10980 (V6986_10980) - 2197455..2198555 (-) 1101 WP_039179845.1 Rap family tetratricopeptide repeat protein -
  V6986_RS10985 (V6986_10985) - 2198543..2198740 (-) 198 WP_047202271.1 hypothetical protein -
  V6986_RS10990 (V6986_10990) spo0A 2199012..2199815 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  V6986_RS10995 (V6986_10995) spoIVB 2200101..2201378 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  V6986_RS11000 (V6986_11000) recN 2201579..2203312 (-) 1734 WP_107163375.1 DNA repair protein RecN Machinery gene
  V6986_RS11005 (V6986_11005) argR 2203346..2203795 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  V6986_RS11010 (V6986_11010) - 2203959..2204813 (-) 855 WP_126681609.1 TlyA family RNA methyltransferase -
  V6986_RS11015 (V6986_11015) dxs 2204810..2206711 (-) 1902 WP_144491421.1 1-deoxy-D-xylulose-5-phosphate synthase -
  V6986_RS11020 (V6986_11020) - 2206862..2207752 (-) 891 WP_126681607.1 polyprenyl synthetase family protein -
  V6986_RS11025 (V6986_11025) - 2207742..2208002 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64739.57 Da        Isoelectric Point: 4.7748

>NTDB_id=942741 V6986_RS11000 WP_107163375.1 2201579..2203312(-) (recN) [Bacillus safensis strain yw6]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=942741 V6986_RS11000 WP_107163375.1 2201579..2203312(-) (recN) [Bacillus safensis strain yw6]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCCGGAAAATCCATCATGATTGATGCTGTCTCACTTCTCGTGGGAGGAAGAGGGTCCTCTGAAT
TTGTCCGATACGGTGAAAAAAAAGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATCCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGTGAAGTAGGACGGCTTTTGCTTGATATACATGGTCAGCACGATA
ACCAGCTGCTTATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCAGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAAACGGCTCAAAAGCTAAGACAGTTGTCCGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCAGCGCAGTTAGAGCCGGGAGAAGATGAGCGGCTTC
AGGAAGAGCGTCATCAAATCAGCAACTACGAGAAAATCTATTCCTCACTCCAAAACGCGTATAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTCGGCATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAGATCAATGATGATTTGAAAAAGCT
ATCTGAACAAGTATCGAATTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGATCAATTAGAAT
TCGATCCGGCTCGTCTTGATTTTATTGAATCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAACTGGATGCGATGAGCCGTGATGCCCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCGAAGCAAATTCAAACGGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGATACAGCTTTTTCTATT
CGATATGCGCCTTTTGGCAGCACCGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCCAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGC
GTGAGCGGCAGAGTCGCACAAGCCATTGCTGAAAAAATTTACAAAGTAGCGTCTGGATCACAAGTGCTCTGCATTACACA
TCTGCCTCAAGTAGCTGCAATGGCTGACACACATCTCTTCATTTCGAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCATGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.737

100

0.757