Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   V6986_RS10990 Genome accession   NZ_CP146358
Coordinates   2199012..2199815 (-) Length   267 a.a.
NCBI ID   WP_024422935.1    Uniprot ID   A0AAX0Z9Q1
Organism   Bacillus safensis strain yw6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2194012..2204815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6986_RS10970 (V6986_10970) - 2196219..2196455 (+) 237 WP_039179838.1 DUF2627 domain-containing protein -
  V6986_RS10975 (V6986_10975) - 2196489..2197226 (-) 738 WP_338591654.1 glycerophosphodiester phosphodiesterase -
  V6986_RS10980 (V6986_10980) - 2197455..2198555 (-) 1101 WP_039179845.1 Rap family tetratricopeptide repeat protein -
  V6986_RS10985 (V6986_10985) - 2198543..2198740 (-) 198 WP_047202271.1 hypothetical protein -
  V6986_RS10990 (V6986_10990) spo0A 2199012..2199815 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  V6986_RS10995 (V6986_10995) spoIVB 2200101..2201378 (-) 1278 WP_039179850.1 SpoIVB peptidase -
  V6986_RS11000 (V6986_11000) recN 2201579..2203312 (-) 1734 WP_107163375.1 DNA repair protein RecN Machinery gene
  V6986_RS11005 (V6986_11005) argR 2203346..2203795 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  V6986_RS11010 (V6986_11010) - 2203959..2204813 (-) 855 WP_126681609.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29932.46 Da        Isoelectric Point: 6.3918

>NTDB_id=942740 V6986_RS10990 WP_024422935.1 2199012..2199815(-) (spo0A) [Bacillus safensis strain yw6]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNEMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=942740 V6986_RS10990 WP_024422935.1 2199012..2199815(-) (spo0A) [Bacillus safensis strain yw6]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTACATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGTCAGGAATGCCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATTATGCCTCATTTAGACGGTCTTGCTGTACTAGAACGCCTCCGTGAAAACAATGAAATGACAAAACAG
CCAAGTGTGATTATGCTAACGGCCTTTGGACAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCTTATTTCAT
TTTAAAGCCATTTGATATGGAAAACCTAGTAGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTTACCCATCGCT
CTTCATCAATCCAAAACAGTGTTCTTCGCAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACCATT
ATTCATGAGATTGGCGTGCCCGCTCATATTAAAGGCTATTTATACTTAAGAGAAGCGATTTCTATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATTACTAAAGTGTTGTACCCAGACATTGCGAAGAAATTTAACACGACCGCTAGCAGGGTAGAAC
GAGCGATTCGTCATGCCATTGAAGTCGCTTGGAGCAGAGGGAACATTGATTCCATTTCCTCACTCTTTGGTTATACTGTC
AGCATGTCAAAAGCGAAACCAACCAATTCAGAATTTATTGCCATGGTAGCTGATCGTTTGAGATTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-120)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.06

100

0.884