Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6P94_RS09575 Genome accession   NZ_CP146343
Coordinates   2056591..2057226 (+) Length   211 a.a.
NCBI ID   WP_133075975.1    Uniprot ID   -
Organism   Pseudomonas sp. ML2-2023-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2051591..2062226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6P94_RS09555 (V6P94_09555) - 2051844..2052776 (+) 933 WP_219262530.1 ABC transporter ATP-binding protein -
  V6P94_RS09560 (V6P94_09560) - 2052773..2053552 (+) 780 WP_133075689.1 ABC transporter permease -
  V6P94_RS09565 (V6P94_09565) - 2053642..2054157 (-) 516 WP_133075688.1 DUF2062 domain-containing protein -
  V6P94_RS09570 (V6P94_09570) comA 2054291..2056507 (+) 2217 WP_326398313.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6P94_RS09575 (V6P94_09575) exbB 2056591..2057226 (+) 636 WP_133075975.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6P94_RS09580 (V6P94_09580) - 2057223..2057651 (+) 429 WP_326398312.1 biopolymer transporter ExbD -
  V6P94_RS09585 (V6P94_09585) lpxK 2057651..2058661 (+) 1011 WP_326398311.1 tetraacyldisaccharide 4'-kinase -
  V6P94_RS09590 (V6P94_09590) - 2058687..2058872 (+) 186 WP_019827923.1 Trm112 family protein -
  V6P94_RS09595 (V6P94_09595) kdsB 2058869..2059633 (+) 765 WP_133075685.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6P94_RS09600 (V6P94_09600) murB 2059630..2060649 (+) 1020 WP_133075684.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22987.30 Da        Isoelectric Point: 6.8768

>NTDB_id=942646 V6P94_RS09575 WP_133075975.1 2056591..2057226(+) (exbB) [Pseudomonas sp. ML2-2023-3]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPEHLLGQVWVWIKDKQMDKEKLKLLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSAFMGTGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDREVDMVGSKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=942646 V6P94_RS09575 WP_133075975.1 2056591..2057226(+) (exbB) [Pseudomonas sp. ML2-2023-3]
GTGTGGGAACTGGTCAAATCAGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTGTGGACCCTGCGTGCCAGTCGCGTAACCCCGGAACATTTGCTCGGGCAGGTCTGGGTCTGGATCAAAGACA
AGCAGATGGACAAGGAAAAACTCAAGTTGCTGCGCGCCGACTCGCCGCTGGGTGAAATCCTGGCCGCGGGTCTGGCCAAC
TCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCACGAGTGATTCACGAGCTAGAGCGGTATCT
CAATGCGCTGGGTACGATTGCGGCAATGGCCCCGTTGCTGGGCCTGCTGGGTACCGTACTGGGCATGATCGATATTTTCA
GCGCCTTCATGGGGACGGGCATGACGACCAATGCTGCCGTGCTTGCAGGCGGTATTTCCAAAGCACTGATCACTACCGCC
GCCGGTCTGATGGTGGGTATTCCGGCAGTCTTCTTCCATCGCTTCCTGCAACGTCGTGTCGACGAGCTGGTGGTCGGGAT
GGAGCAGGAAGCGATCAAGCTGGTTGAGGTGATACAAGGCGACCGTGAAGTCGATATGGTCGGGAGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848