Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6P94_RS09570 Genome accession   NZ_CP146343
Coordinates   2054291..2056507 (+) Length   738 a.a.
NCBI ID   WP_326398313.1    Uniprot ID   -
Organism   Pseudomonas sp. ML2-2023-3     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049291..2061507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6P94_RS09550 (V6P94_09550) - 2051084..2051710 (+) 627 WP_133075691.1 glutathione S-transferase family protein -
  V6P94_RS09555 (V6P94_09555) - 2051844..2052776 (+) 933 WP_219262530.1 ABC transporter ATP-binding protein -
  V6P94_RS09560 (V6P94_09560) - 2052773..2053552 (+) 780 WP_133075689.1 ABC transporter permease -
  V6P94_RS09565 (V6P94_09565) - 2053642..2054157 (-) 516 WP_133075688.1 DUF2062 domain-containing protein -
  V6P94_RS09570 (V6P94_09570) comA 2054291..2056507 (+) 2217 WP_326398313.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6P94_RS09575 (V6P94_09575) exbB 2056591..2057226 (+) 636 WP_133075975.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6P94_RS09580 (V6P94_09580) - 2057223..2057651 (+) 429 WP_326398312.1 biopolymer transporter ExbD -
  V6P94_RS09585 (V6P94_09585) lpxK 2057651..2058661 (+) 1011 WP_326398311.1 tetraacyldisaccharide 4'-kinase -
  V6P94_RS09590 (V6P94_09590) - 2058687..2058872 (+) 186 WP_019827923.1 Trm112 family protein -
  V6P94_RS09595 (V6P94_09595) kdsB 2058869..2059633 (+) 765 WP_133075685.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6P94_RS09600 (V6P94_09600) murB 2059630..2060649 (+) 1020 WP_133075684.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80553.90 Da        Isoelectric Point: 10.2789

>NTDB_id=942645 V6P94_RS09570 WP_326398313.1 2054291..2056507(+) (comA) [Pseudomonas sp. ML2-2023-3]
MYTGMFALATGLIALRFLPVLPSPGWLLLMFMAGLLLLAIRAWPVGLFVLGLTWACVQGQRALDDRLPAALDGRTLWVEG
HVVGLPQQTGSVVRFELQDARSRHGALPTTIRLSWYGGPSVKSGERWRLAVKLKRPKGLLNPQSFDYQAWLLAQRIGATG
VVKEGQLLAAASHAWRDGLRQRLLRIDGNGREPWLAALVMGDGSGLSRDDWTLLQTTGTVHLLVISGQHIGLFAGLIYGL
VALLARYGLWPRYLPWLPWACGLAFAGATGYGLLAGFEVPVQRACVMLGLVLIWRLRFRHLGVWLPFLLALNAVLIVELL
ASLMPGFWLSFSAVAVLIFTFGGRLGAWGWRAAWLRPHGLIALGLFPMMWILGLPISLTGPLANLVAVPWISLLVLPTAL
LGTLLLPVPWLGESLLWLSGGLLDLLIKGLALLADVFPPWLPPVVPIYIWLLSALGALILLLPAGMVLRPLGWPLVLLAV
FVPREQVPHGEVEVLQLDVGQGLAIVLRTRNHTLLYDAGPKVRDFDQGERVVVPVLRSLGVGALDVMLLSHADSDHAGGA
LAVQRAIRVARVFGGDVAGLPEPLRAQPCTSGEGWEWDGVKFSLWQWPGASNSNQKSCVLQVQARDERLLLTGDIDTHAE
RALLQSPLAVPVRWLQSPHHGSKTSSSMAFLKALAPENVLISRGHGNNFGHPHPQVMSRYQALGVQVWDSAEQGAVWFRL
GASAKVESMGGQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=942645 V6P94_RS09570 WP_326398313.1 2054291..2056507(+) (comA) [Pseudomonas sp. ML2-2023-3]
ATGTACACAGGGATGTTTGCGTTGGCGACGGGGCTTATTGCACTGCGGTTTTTACCCGTGTTGCCGTCGCCGGGGTGGTT
GCTGCTGATGTTCATGGCGGGGCTGTTGCTGTTGGCTATTCGTGCCTGGCCGGTGGGGCTTTTTGTGCTTGGGCTGACGT
GGGCTTGCGTCCAGGGACAAAGGGCGCTGGATGATCGCTTGCCCGCCGCGCTCGACGGCAGGACGCTTTGGGTCGAAGGG
CATGTGGTCGGATTACCGCAGCAGACTGGCAGCGTCGTACGTTTTGAATTGCAGGATGCCCGCTCGCGCCACGGCGCATT
ACCCACGACCATCAGGTTGAGCTGGTATGGCGGGCCGTCGGTCAAGAGTGGGGAACGCTGGCGGCTAGCGGTCAAGCTCA
AGCGCCCCAAGGGTTTGCTCAATCCTCAATCGTTTGATTACCAGGCCTGGCTGCTGGCGCAACGCATCGGTGCGACGGGC
GTGGTCAAGGAGGGTCAGTTACTGGCTGCGGCGAGTCATGCCTGGCGCGATGGCTTGCGTCAGCGTCTGTTGCGTATCGA
TGGCAATGGCCGGGAACCGTGGCTGGCGGCGCTGGTCATGGGTGACGGTTCTGGTTTGAGCCGTGATGACTGGACGCTGC
TGCAGACAACCGGAACCGTGCATCTGCTGGTGATTTCGGGGCAGCACATAGGCTTGTTTGCCGGATTGATCTACGGGTTG
GTCGCCTTGCTGGCGCGCTATGGCCTGTGGCCGCGCTACTTGCCGTGGCTGCCTTGGGCTTGCGGCCTGGCGTTTGCGGG
GGCCACGGGATATGGCCTGCTCGCCGGTTTTGAAGTACCGGTGCAGCGCGCGTGCGTGATGCTGGGGCTGGTGCTGATCT
GGCGCTTGCGGTTTCGTCATCTGGGGGTGTGGTTGCCATTCCTGCTGGCACTCAATGCGGTGCTGATTGTGGAGCTACTG
GCGAGTTTGATGCCGGGGTTCTGGTTGTCGTTCAGCGCCGTGGCGGTACTGATTTTCACCTTCGGCGGTCGTCTTGGGGC
CTGGGGGTGGAGGGCCGCGTGGCTGCGCCCCCACGGGCTGATCGCCCTGGGTTTGTTCCCGATGATGTGGATTCTCGGAC
TGCCCATCAGCCTGACGGGGCCGCTGGCCAATCTGGTTGCCGTGCCCTGGATCAGCCTTTTGGTGTTGCCGACGGCATTG
CTGGGAACGCTGCTGCTGCCTGTGCCCTGGCTTGGGGAAAGCCTGCTGTGGCTGTCGGGTGGTTTGCTCGATCTGTTGAT
CAAGGGGCTGGCCCTGCTGGCCGATGTTTTCCCGCCCTGGCTGCCCCCGGTCGTGCCGATTTACATATGGCTGTTGAGCG
CGCTTGGGGCGCTGATCCTGCTGCTGCCAGCCGGAATGGTGCTCAGACCGCTGGGGTGGCCGCTGGTACTGCTGGCTGTC
TTTGTTCCCCGCGAACAGGTCCCCCACGGCGAGGTTGAGGTGCTACAGCTGGATGTCGGGCAGGGGCTGGCGATTGTCTT
GCGCACCCGTAACCACACGCTTTTGTATGACGCAGGCCCCAAGGTCCGGGATTTTGATCAGGGTGAACGGGTAGTGGTGC
CTGTACTGCGTTCATTGGGGGTAGGCGCGCTGGATGTCATGCTGCTGAGCCACGCCGACTCGGATCATGCGGGCGGTGCG
TTGGCGGTTCAGCGGGCAATCCGCGTCGCACGGGTGTTTGGCGGCGATGTGGCGGGGTTGCCAGAACCGTTGCGGGCGCA
GCCGTGTACGAGCGGGGAGGGTTGGGAGTGGGACGGCGTGAAATTCTCACTCTGGCAGTGGCCGGGGGCGAGCAATAGCA
ATCAGAAGTCCTGCGTACTGCAGGTGCAAGCACGGGACGAACGGCTACTGTTGACGGGGGATATTGATACCCATGCCGAG
CGGGCATTGCTGCAAAGTCCGCTGGCCGTTCCTGTCCGCTGGTTGCAATCGCCCCATCACGGCAGCAAGACGTCGTCGTC
GATGGCTTTTCTCAAGGCGCTGGCGCCTGAAAACGTGCTGATTTCCCGTGGGCACGGTAACAATTTTGGTCACCCGCACC
CGCAGGTCATGTCGCGTTATCAAGCCTTGGGGGTGCAGGTGTGGGATAGCGCCGAGCAAGGGGCTGTGTGGTTTCGTTTG
GGGGCGTCGGCAAAGGTTGAGAGCATGGGTGGCCAGCGTCGGTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-461)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.501

97.425

0.589