Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   V7R83_RS10980 Genome accession   NZ_CP146288
Coordinates   2670218..2671801 (-) Length   527 a.a.
NCBI ID   WP_005674042.1    Uniprot ID   E7RYF2
Organism   Lautropia mirabilis ATCC 51599     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2665218..2676801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R83_RS10955 (V7R83_10955) - 2666093..2667040 (+) 948 WP_005674035.1 carbohydrate kinase family protein -
  V7R83_RS10960 (V7R83_10960) - 2667097..2667660 (-) 564 WP_005674036.1 YggT family protein -
  V7R83_RS10965 (V7R83_10965) - 2667918..2669114 (-) 1197 WP_126348086.1 hypothetical protein -
  V7R83_RS10970 (V7R83_10970) - 2669211..2669474 (-) 264 WP_126348085.1 hypothetical protein -
  V7R83_RS10975 (V7R83_10975) ampD 2669649..2670218 (-) 570 WP_005674041.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  V7R83_RS10980 (V7R83_10980) pilR 2670218..2671801 (-) 1584 WP_005674042.1 sigma-54 dependent transcriptional regulator Regulator
  V7R83_RS10985 (V7R83_10985) - 2671798..2673579 (-) 1782 WP_005674043.1 ATP-binding protein -
  V7R83_RS10990 (V7R83_10990) - 2673614..2673904 (-) 291 WP_005674044.1 PP0621 family protein -
  V7R83_RS10995 (V7R83_10995) ccsA 2673924..2674871 (-) 948 WP_050781913.1 cytochrome c biogenesis protein CcsA -
  V7R83_RS11000 (V7R83_11000) ffh 2674971..2676362 (+) 1392 WP_040529998.1 signal recognition particle protein -

Sequence

Protein


Download         Length: 527 a.a.        Molecular weight: 56982.08 Da        Isoelectric Point: 5.4504

>NTDB_id=942561 V7R83_RS10980 WP_005674042.1 2670218..2671801(-) (pilR) [Lautropia mirabilis ATCC 51599]
MKVTADDDNRLPPGRTPRVLVVDDEESLRELLELTLVGMGLDVDVAEDLSTARAMLERYRYSLCLTDMRLPDGNGLDLVR
LINSQWRDTPVAVITAYASAENAVAALKAGAFDYLNKPVGLDALRALVRSALKLSDTPATKNPVAPPTAQPGGKSTRLLG
TSPAIDAVRASIARMARSMAPVHVTGESGSGKELAARLIHQLSGRAEGPFIAVNCGAIPENLMESEFFGYRKGAFTGADS
DRIGFFMAANGGTLFLDEVADLPLAMQVKLLRAIQEKRIRKVGAVTEEAVDVRIVSATHQNLAQCVAQGRFRQDLFYRLN
VIELRMPALRERQEDVGVLADAILQRLAQRSGLEGVPQLSSMALRYLQSYPFPGNVRELENILERALAFSDGRVINVEDL
GLRPIVTDEKERELDDSLHQGLAAPGGMRPGQGTLAAVPWSAGQGASVSDAAADEGQGTSSMPAASEPRGWKLIDGVPTS
LPDYLDQVERDAILLALERTGQNRTAAARLLGITFRALRYRLQRLGI

Nucleotide


Download         Length: 1584 bp        

>NTDB_id=942561 V7R83_RS10980 WP_005674042.1 2670218..2671801(-) (pilR) [Lautropia mirabilis ATCC 51599]
ATGAAAGTCACCGCCGACGACGATAACCGTCTGCCCCCCGGCCGGACGCCCCGGGTGCTGGTGGTGGACGACGAGGAAAG
CCTGCGCGAGCTGCTGGAGCTGACGCTGGTGGGCATGGGGCTGGATGTGGACGTGGCCGAGGACCTGTCCACGGCACGTG
CAATGCTGGAGCGCTACCGCTATTCGCTCTGCCTGACCGACATGCGCCTGCCCGACGGCAACGGCCTGGATCTGGTGCGG
CTCATCAACAGCCAGTGGCGCGACACGCCGGTGGCGGTCATCACGGCCTACGCCAGTGCGGAGAACGCCGTGGCGGCGCT
GAAGGCAGGGGCCTTCGATTATCTGAACAAGCCGGTGGGGCTGGATGCACTGCGGGCGCTGGTGCGTTCGGCCCTGAAGC
TCTCGGATACTCCTGCCACGAAGAATCCGGTCGCGCCACCGACGGCGCAGCCCGGGGGCAAGTCCACCCGCCTGCTGGGC
ACGTCGCCCGCCATCGATGCGGTGCGCGCTTCCATCGCGCGCATGGCGCGCAGCATGGCGCCCGTGCACGTCACGGGTGA
GTCCGGTTCCGGCAAGGAGCTGGCGGCTCGGCTCATCCATCAGTTGAGCGGCCGTGCCGAAGGGCCTTTCATCGCCGTGA
ACTGCGGCGCCATCCCCGAGAACCTGATGGAGTCGGAGTTCTTCGGCTACCGCAAGGGGGCGTTCACGGGGGCGGATTCC
GATCGCATCGGCTTCTTCATGGCGGCCAATGGCGGCACGCTGTTCCTGGATGAGGTGGCCGACCTGCCGCTGGCCATGCA
GGTGAAGCTGCTGCGTGCCATCCAGGAAAAGCGCATCCGCAAGGTGGGGGCGGTGACGGAAGAAGCGGTGGATGTGCGCA
TCGTCAGCGCCACCCACCAGAACCTGGCGCAGTGCGTGGCACAGGGACGGTTCCGGCAGGACCTTTTCTACCGGCTCAAC
GTGATCGAGCTGCGCATGCCGGCGCTGCGCGAGCGGCAGGAGGACGTGGGCGTGCTGGCCGATGCCATCCTGCAGCGGCT
GGCACAGCGCAGCGGTCTGGAGGGCGTTCCGCAGCTCTCCAGCATGGCGCTGCGCTACCTGCAGAGCTATCCGTTTCCGG
GCAACGTGCGCGAGCTGGAGAACATCCTGGAACGGGCGCTGGCGTTTTCCGATGGTCGTGTGATCAACGTCGAGGACCTG
GGGCTGCGCCCTATCGTGACCGACGAGAAGGAACGTGAGCTGGATGACTCCCTGCATCAGGGGCTGGCTGCCCCGGGAGG
GATGCGTCCGGGTCAGGGGACATTGGCCGCTGTACCCTGGAGTGCAGGGCAGGGGGCATCGGTGTCCGATGCTGCTGCCG
ACGAAGGGCAGGGCACGTCGTCGATGCCAGCCGCCAGCGAACCGCGCGGCTGGAAGCTGATTGATGGGGTGCCCACCTCA
CTGCCCGATTATCTGGACCAGGTGGAGCGTGATGCCATCCTGCTGGCGCTGGAGCGTACCGGCCAGAATCGTACGGCGGC
GGCGCGGTTGCTGGGCATCACGTTCCGTGCATTGCGTTATCGGCTGCAGCGGCTGGGCATCTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(485-525)

Response regulator receiver domain (Response_reg)

(19-128)

Sigma-54 interaction domain (Sigma54_activat)

(159-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E7RYF2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

50.784

96.774

0.491
  pilR Acinetobacter baumannii strain A118

43.689

97.723

0.427