Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V7R82_RS00060 Genome accession   NZ_CP146287
Coordinates   12993..13511 (+) Length   172 a.a.
NCBI ID   WP_314692539.1    Uniprot ID   -
Organism   Abiotrophia defectiva ATCC 49176     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 7993..18511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V7R82_RS00035 (V7R82_00035) - 8786..9511 (+) 726 WP_291430485.1 ABC transporter permease -
  V7R82_RS00040 (V7R82_00040) - 9527..10528 (+) 1002 WP_311468042.1 LytTR family transcriptional regulator DNA-binding domain-containing protein -
  V7R82_RS00045 (V7R82_00045) - 10688..11542 (+) 855 WP_070756475.1 ABC transporter ATP-binding protein -
  V7R82_RS00050 (V7R82_00050) - 11539..12270 (+) 732 WP_070756476.1 ABC transporter permease -
  V7R82_RS00055 (V7R82_00055) rpsF 12657..12956 (+) 300 WP_023392585.1 30S ribosomal protein S6 -
  V7R82_RS00060 (V7R82_00060) ssb 12993..13511 (+) 519 WP_314692539.1 single-stranded DNA-binding protein Machinery gene
  V7R82_RS00065 (V7R82_00065) rpsR 13534..13779 (+) 246 WP_023392587.1 30S ribosomal protein S18 -
  V7R82_RS00070 (V7R82_00070) - 14097..15908 (+) 1812 WP_314692541.1 DHH family phosphoesterase -
  V7R82_RS00075 (V7R82_00075) rplI 15908..16360 (+) 453 WP_314692543.1 50S ribosomal protein L9 -
  V7R82_RS00080 (V7R82_00080) rsmG 16545..17267 (+) 723 WP_314692545.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  V7R82_RS00085 (V7R82_00085) - 17278..18039 (+) 762 WP_023392591.1 AAA family ATPase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19007.77 Da        Isoelectric Point: 4.7352

>NTDB_id=942523 V7R82_RS00060 WP_314692539.1 12993..13511(+) (ssb) [Abiotrophia defectiva ATCC 49176]
MNTVQLVGRLTRDVELRFTSSGTAVGSFTIAVNRNFTNQQGEREADFISCVIWRKAAENLANFTRKGSLIAIDGRLQTRS
YDNQQGQRVYVTEVVVNNFDLLESRSVTEQRPVSSPNTDHQAGVYGAGGGGGYQSQPQMNQNNYNQSFSSSSTSPFMDEG
HPIDISEDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=942523 V7R82_RS00060 WP_314692539.1 12993..13511(+) (ssb) [Abiotrophia defectiva ATCC 49176]
ATGAATACTGTACAATTAGTCGGACGTTTAACCCGTGATGTTGAATTACGTTTTACCTCATCTGGCACTGCAGTCGGTTC
TTTTACCATTGCGGTTAACCGTAATTTTACTAACCAACAAGGTGAACGTGAAGCGGACTTCATTTCGTGTGTGATTTGGC
GGAAGGCAGCTGAAAACTTAGCTAACTTCACGCGTAAAGGCTCCTTGATTGCTATTGATGGACGTCTTCAAACACGTTCA
TATGATAATCAACAAGGCCAACGAGTATATGTAACCGAAGTGGTTGTTAACAACTTCGATTTGCTAGAATCTCGTTCTGT
GACTGAACAACGCCCTGTCTCTAGTCCAAACACTGATCACCAAGCAGGTGTTTATGGTGCAGGTGGTGGAGGCGGATACC
AATCACAGCCACAAATGAATCAAAATAACTATAATCAATCATTTTCTTCATCAAGCACTTCTCCATTCATGGATGAAGGT
CACCCAATTGATATTTCTGAAGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.302

100

0.593
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.412

100

0.529