Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   VP398_RS05220 Genome accession   NZ_CP146231
Coordinates   1096652..1097470 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain G20AB08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1091652..1102470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS05205 (VP398_05205) pilE 1091869..1092294 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  VP398_RS05210 (VP398_05210) pilY2 1092291..1092773 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP398_RS05215 (VP398_05215) pilY1 1092786..1096640 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP398_RS05220 (VP398_05220) pilX 1096652..1097470 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VP398_RS05225 (VP398_05225) pilW 1097467..1098468 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  VP398_RS05230 (VP398_05230) pilV 1098469..1099029 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  VP398_RS05235 (VP398_05235) fimU 1099023..1099496 (-) 474 WP_001214061.1 GspH/FimT family pseudopilin Machinery gene
  VP398_RS05240 (VP398_05240) ispH 1099666..1100616 (-) 951 WP_083028594.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  VP398_RS05245 (VP398_05245) gmk 1100739..1101368 (+) 630 WP_000015937.1 guanylate kinase -
  VP398_RS05250 (VP398_05250) rpoZ 1101441..1101719 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  VP398_RS05255 (VP398_05255) - 1101758..1101887 (+) 130 Protein_1012 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=942239 VP398_RS05220 WP_000149374.1 1096652..1097470(-) (pilX) [Acinetobacter baumannii strain G20AB08]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=942239 VP398_RS05220 WP_000149374.1 1096652..1097470(-) (pilX) [Acinetobacter baumannii strain G20AB08]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993