Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   VP398_RS05210 Genome accession   NZ_CP146231
Coordinates   1092291..1092773 (-) Length   160 a.a.
NCBI ID   WP_001046420.1    Uniprot ID   A0A7U3Y2Y6
Organism   Acinetobacter baumannii strain G20AB08     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1087291..1097773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VP398_RS05175 (VP398_05175) - 1087397..1088431 (+) 1035 WP_001189447.1 lipase secretion chaperone -
  VP398_RS05180 (VP398_05180) - 1088546..1089487 (+) 942 WP_085916958.1 triacylglycerol lipase -
  VP398_RS05185 (VP398_05185) rplS 1089540..1089908 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  VP398_RS05190 (VP398_05190) trmD 1090117..1090857 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  VP398_RS05195 (VP398_05195) rimM 1090903..1091451 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  VP398_RS05200 (VP398_05200) rpsP 1091471..1091722 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  VP398_RS05205 (VP398_05205) pilE 1091869..1092294 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  VP398_RS05210 (VP398_05210) pilY2 1092291..1092773 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  VP398_RS05215 (VP398_05215) pilY1 1092786..1096640 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  VP398_RS05220 (VP398_05220) pilX 1096652..1097470 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17548.77 Da        Isoelectric Point: 8.4817

>NTDB_id=942237 VP398_RS05210 WP_001046420.1 1092291..1092773(-) (pilY2) [Acinetobacter baumannii strain G20AB08]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNSASNGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=942237 VP398_RS05210 WP_001046420.1 1092291..1092773(-) (pilY2) [Acinetobacter baumannii strain G20AB08]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAAATTACTGATGATACGACCACAGGTAATTTATTAACAAATTCTGCTTCTAATGGTCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-135)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y2Y6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

97.5

100

0.975
  comE Acinetobacter baylyi ADP1

40.116

100

0.431