Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   R8665_RS00955 Genome accession   NZ_AP028386
Coordinates   192440..193945 (-) Length   501 a.a.
NCBI ID   WP_317677074.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11348     
Function   interact with DprA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 187440..198945
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8665_RS00925 (B11348_01810) - 187642..188826 (-) 1185 WP_317677071.1 metallophosphoesterase -
  R8665_RS00930 (B11348_01820) - 188836..189045 (-) 210 WP_002851709.1 alkylphosphonate utilization protein -
  R8665_RS00935 (B11348_01830) - 189038..189757 (-) 720 WP_002900759.1 TerC family protein -
  R8665_RS00940 (B11348_01840) purN 189829..190395 (-) 567 WP_002866343.1 phosphoribosylglycinamide formyltransferase -
  R8665_RS00945 (B11348_01850) - 190386..191756 (-) 1371 WP_317677072.1 NAD(P)H-hydrate dehydratase -
  R8665_RS00950 (B11348_01860) - 191740..192438 (-) 699 WP_317677073.1 NYN domain-containing protein -
  R8665_RS00955 (B11348_01870) comM 192440..193945 (-) 1506 WP_317677074.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  R8665_RS00960 (B11348_01880) def 193942..194469 (-) 528 WP_002851936.1 peptide deformylase -
  R8665_RS00965 (B11348_01890) clpP 194505..195089 (-) 585 WP_002806309.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP -
  R8665_RS00970 (B11348_01900) tig 195089..196423 (-) 1335 WP_317677075.1 trigger factor -
  R8665_RS00975 (B11348_01910) folE 196567..197139 (+) 573 WP_002825654.1 GTP cyclohydrolase I FolE -
  R8665_RS00980 (B11348_01920) fliI 197139..198524 (+) 1386 WP_002867112.1 flagellar protein export ATPase FliI -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 56300.36 Da        Isoelectric Point: 9.0156

>NTDB_id=94171 R8665_RS00955 WP_317677074.1 192440..193945(-) (comM) [Campylobacter jejuni strain BCH-11348]
MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVERIKATLLSCNFVFPAKKITINLSPSGIPKKGSHFDL
AIALLILLQNEELDDFFVVGELGLDGSIKSTNELFSLLLFLSAKIEKAKIVVPKSIAQKASMIPNLEIYGLENLNGAIEF
FKEKNYENFRFSHNHPLFANPLQIGNEIFLQNMDFKLDFKDIKGQEKAKRACMIAALGMHNILFEGSPGSGKSMCAKRLV
YIMPPQSLSEILMQNAYMSLNSKDCEFTKIRAFRHPHHTSTRASIFGGGTKNARIGEVSLANGGVLFFDEFPHFNKQIIE
SLREPLEDHKIHISRVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLYVAMDEISK
DDKASISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAKDTLDLAISRYNLSLRSLNKILKVSRSIADL
EQSLNINKTHILEALSFRARN

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=94171 R8665_RS00955 WP_317677074.1 192440..193945(-) (comM) [Campylobacter jejuni strain BCH-11348]
ATGAAAAAACTAAAGTGCATAAGCTTTCATGAAGGTTTAGACATTATAGAGGTAGAATCCACTTTTACAAGAGGTTTGCC
AAATTTAAGCATAGTAGGGCTTGCAAGTGTAGCGATTAAGGAAAGTGTCGAACGCATCAAAGCCACGCTTTTAAGTTGTA
ATTTTGTTTTTCCTGCTAAAAAAATTACTATCAATCTTAGTCCTTCAGGAATCCCAAAAAAGGGATCGCATTTTGATTTG
GCTATTGCTTTATTAATCCTTTTACAAAATGAAGAATTAGATGACTTTTTTGTAGTAGGAGAATTAGGACTTGATGGAAG
TATTAAAAGCACAAATGAGCTTTTTTCTTTGCTTTTGTTTCTCTCTGCTAAAATTGAAAAAGCTAAAATCGTTGTTCCAA
AAAGTATAGCACAAAAAGCTTCTATGATACCAAATTTAGAGATTTATGGACTTGAAAATTTAAATGGAGCAATAGAGTTT
TTTAAAGAAAAAAATTATGAAAATTTTCGCTTCTCACACAATCATCCTTTATTTGCAAACCCTTTACAAATAGGCAATGA
AATTTTTTTACAAAATATGGATTTTAAACTTGATTTTAAAGATATCAAAGGGCAGGAAAAAGCCAAAAGAGCTTGTATGA
TAGCTGCTTTAGGTATGCATAATATCTTATTTGAAGGAAGTCCAGGAAGTGGTAAAAGTATGTGTGCTAAACGTCTTGTT
TATATCATGCCTCCTCAAAGTTTAAGTGAAATTTTAATGCAAAATGCTTACATGTCTTTAAATTCAAAAGATTGTGAATT
TACTAAAATTCGTGCTTTTCGTCATCCTCATCATACTTCTACAAGAGCAAGTATTTTTGGCGGAGGAACAAAAAATGCCA
GAATTGGAGAAGTATCACTTGCAAATGGTGGAGTATTGTTTTTTGATGAATTTCCACATTTTAATAAGCAAATCATAGAA
AGTTTAAGAGAGCCTTTAGAGGATCATAAAATTCATATTTCAAGAGTAAATTCTAAAATCACTTATGAAACAAAATTTAG
CTTTATAGCTGCCCAAAATCCTTGTCCTTGCGGAAATTTATTTTCTAAAAATCTTTCTTGTGTTTGTAGTGAAAATGAGA
TTAAAAAGTATAAAAATCACATTTCAGCTCCTATTATGGATAGGATTGATCTTTATGTAGCTATGGATGAGATCAGCAAG
GATGATAAAGCAAGTATAAGTTCTAAAGAAATGAGTGAAAAAATTTTACAAGCTTTTATTTTTGGTAAAAAACGGGGACA
AAAAGAATTTAATGGGAAATTAAAAGATGAAGATTTGAGTCGTTTTTGTGTATTGGAAAAAGATGCTAAAGATACGCTAG
ATCTAGCAATTTCACGTTATAATCTTTCTTTGCGATCACTCAATAAAATTTTAAAAGTTTCAAGAAGTATAGCGGATTTA
GAACAAAGTCTTAATATTAACAAAACCCATATTTTAGAAGCTTTAAGCTTTAGGGCAAGGAATTAA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(18-134)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(407-498)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(198-400)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Helicobacter pylori 26695

46.894

99.601

0.467
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

36.4

99.8

0.363

Multiple sequence alignment