Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   V6L81_RS04940 Genome accession   NZ_CP146077
Coordinates   1061742..1062149 (+) Length   135 a.a.
NCBI ID   WP_095019610.1    Uniprot ID   -
Organism   Pseudomonas bubulae strain ML3-2023-1     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1056742..1067149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L81_RS04910 (V6L81_04910) - 1056791..1057795 (-) 1005 WP_094999859.1 aspartate carbamoyltransferase catalytic subunit -
  V6L81_RS04915 (V6L81_04915) pyrR 1057808..1058314 (-) 507 WP_095023228.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  V6L81_RS04920 (V6L81_04920) ruvX 1058398..1058838 (-) 441 WP_088378774.1 Holliday junction resolvase RuvX -
  V6L81_RS04925 (V6L81_04925) - 1058838..1059410 (-) 573 WP_094999861.1 YqgE/AlgH family protein -
  V6L81_RS04930 (V6L81_04930) - 1059565..1060464 (-) 900 WP_094999862.1 energy transducer TonB -
  V6L81_RS04935 (V6L81_04935) gshB 1060541..1061494 (-) 954 WP_138738359.1 glutathione synthase -
  V6L81_RS04940 (V6L81_04940) pilG 1061742..1062149 (+) 408 WP_095019610.1 twitching motility response regulator PilG Regulator
  V6L81_RS04945 (V6L81_04945) pilH 1062191..1062568 (+) 378 WP_094999865.1 twitching motility response regulator PilH -
  V6L81_RS04950 (V6L81_04950) - 1062579..1063118 (+) 540 WP_094999866.1 chemotaxis protein CheW -
  V6L81_RS04955 (V6L81_04955) - 1063160..1065217 (+) 2058 WP_338660515.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14926.47 Da        Isoelectric Point: 9.1707

>NTDB_id=941595 V6L81_RS04940 WP_095019610.1 1061742..1062149(+) (pilG) [Pseudomonas bubulae strain ML3-2023-1]
MEKHSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAIDGFDALAKIVDHHPHIIFVDIMMPRLDGYQTCALIKSNRAFK
SIPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSRDELLSAIKAHVPAFTITQSAQ

Nucleotide


Download         Length: 408 bp        

>NTDB_id=941595 V6L81_RS04940 WP_095019610.1 1061742..1062149(+) (pilG) [Pseudomonas bubulae strain ML3-2023-1]
ATGGAAAAGCATTCCAGCGCCTTGAAGGTGATGGTGATCGACGATTCGAAAACCATTCGCCGCACCGCCGAAACACTCTT
GAAAAACGTGGGCTGCGAGGTGATTACCGCCATCGATGGCTTTGATGCGCTGGCCAAGATTGTCGACCACCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCCCTGATCAAGAGCAACCGGGCTTTCAAG
TCGATCCCGGTGATCATGTTGTCGTCCAAGGACGGTCTGTTCGACAAGGCCAAGGGGCGGATTGTTGGCTCTGATCAATT
TTTGACCAAGCCCTTCAGTCGCGACGAACTGCTGAGCGCAATCAAGGCACATGTGCCAGCCTTCACTATCACCCAAAGTG
CCCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

73.228

94.074

0.689
  vicR Streptococcus mutans UA159

39.683

93.333

0.37