Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6985_RS02665 Genome accession   NZ_CP146071
Coordinates   545186..546247 (+) Length   353 a.a.
NCBI ID   WP_021139427.1    Uniprot ID   T0PBN8
Organism   Aeromonas salmonicida strain GMT3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 540186..551247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6985_RS02645 (V6985_02650) ybaK 540893..541366 (-) 474 WP_021139431.1 Cys-tRNA(Pro) deacylase -
  V6985_RS02650 (V6985_02655) - 541615..542466 (-) 852 WP_409011659.1 universal stress protein -
  V6985_RS02655 (V6985_02660) - 542486..543976 (-) 1491 WP_021139429.1 SulP family inorganic anion transporter -
  V6985_RS02660 (V6985_02665) pncC 544614..545105 (+) 492 WP_021139428.1 nicotinamide-nucleotide amidase -
  V6985_RS02665 (V6985_02670) recA 545186..546247 (+) 1062 WP_021139427.1 recombinase RecA Machinery gene
  V6985_RS02670 (V6985_02675) - 546283..546792 (+) 510 WP_087757128.1 regulatory protein RecX -
  V6985_RS02675 (V6985_02680) alaS 547204..549828 (+) 2625 WP_113720606.1 alanine--tRNA ligase -
  V6985_RS02680 (V6985_02685) - 549845..551092 (+) 1248 WP_234591882.1 aspartate kinase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37954.70 Da        Isoelectric Point: 4.8912

>NTDB_id=941539 V6985_RS02665 WP_021139427.1 545186..546247(+) (recA) [Aeromonas salmonicida strain GMT3]
MDQNKQKALAAALGQIEKQFGKGSIMRLGDSKTMDIEAISTGSLSLDVALGIGGLPCGRIVEIYGPESSGKTTLTLQVIA
EAQKKGKVCAFIDAEHALDPIYAAKLGVNVDDLLISQPDTGEQALEICDMLVRSNAVDVIIVDSVAALTPKAEIEGEMGD
SHVGLQARLMSQALRKLTANIKNANCLCIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGAIKEGDEVVGNE
TRVKVVKNKVAPPFKQAEFQIFYGVGISKEGELVDLGVKHKLIDKAGAWYSYNGEKIGQGKANVMKLFTENKVMAAEVEA
RLRELLLSGDAPAEKPVVADADELEAESEQEFE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=941539 V6985_RS02665 WP_021139427.1 545186..546247(+) (recA) [Aeromonas salmonicida strain GMT3]
ATGGATCAGAACAAACAGAAGGCACTGGCGGCTGCGCTGGGTCAGATTGAAAAGCAGTTCGGCAAAGGCTCCATCATGCG
TCTGGGCGACAGCAAGACCATGGATATCGAAGCCATTTCTACCGGTTCCCTCTCCCTGGACGTGGCGCTGGGTATCGGCG
GTTTGCCGTGCGGCCGTATCGTCGAGATCTATGGCCCGGAATCTTCCGGCAAAACCACCCTCACCCTGCAGGTGATTGCG
GAAGCCCAGAAGAAAGGCAAGGTCTGTGCCTTTATCGATGCGGAGCACGCCCTCGACCCCATCTATGCAGCCAAACTGGG
TGTCAACGTCGATGACCTGCTGATCTCCCAGCCGGATACCGGTGAGCAGGCGCTGGAAATCTGCGACATGCTGGTGCGCT
CCAACGCCGTTGACGTCATCATCGTCGACTCGGTGGCCGCTCTGACGCCGAAAGCAGAAATCGAAGGCGAGATGGGTGAT
TCCCACGTCGGCCTGCAGGCTCGTCTGATGTCCCAGGCGCTGCGCAAGCTGACCGCCAACATCAAGAACGCCAACTGCCT
GTGTATCTTCATCAACCAAATCCGGATGAAGATCGGTGTCATGTTCGGCAGCCCGGAAACCACTACCGGTGGTAACGCGC
TCAAGTTCTACGCCTCAGTACGTCTGGACATCCGCCGCATCGGCGCCATCAAGGAAGGTGACGAAGTGGTCGGTAACGAG
ACCCGTGTCAAGGTGGTCAAGAACAAGGTTGCCCCTCCCTTCAAGCAGGCTGAATTCCAGATTTTCTACGGTGTCGGTAT
CTCCAAGGAAGGCGAGCTGGTTGATCTCGGCGTCAAGCACAAGCTGATCGACAAGGCCGGTGCCTGGTACAGCTACAACG
GCGAGAAGATAGGTCAGGGCAAGGCCAACGTGATGAAGCTGTTCACCGAGAACAAGGTGATGGCGGCCGAGGTGGAAGCC
AGACTGCGTGAGTTGCTGCTCTCCGGCGATGCGCCGGCCGAGAAGCCGGTCGTGGCGGATGCCGACGAGCTCGAAGCCGA
AAGCGAACAAGAGTTCGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB T0PBN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

76.59

98.017

0.751
  recA Vibrio cholerae strain A1552

75.358

98.867

0.745
  recA Vibrio cholerae O1 biovar El Tor strain E7946

75.358

98.867

0.745
  recA Glaesserella parasuis strain SC1401

69.688

100

0.697
  recA Acinetobacter baumannii D1279779

74.695

92.918

0.694
  recA Acinetobacter baylyi ADP1

74.085

92.918

0.688
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae MS11

71.779

92.351

0.663
  recA Neisseria gonorrhoeae strain FA1090

71.779

92.351

0.663
  recA Ralstonia pseudosolanacearum GMI1000

74.92

88.102

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

66.144

90.368

0.598
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.444

93.768

0.595
  recA Helicobacter pylori strain NCTC11637

64.308

92.068

0.592
  recA Streptococcus mitis SK321

59.259

99.433

0.589
  recA Helicobacter pylori 26695

63.692

92.068

0.586
  recA Streptococcus pneumoniae Rx1

58.739

98.867

0.581
  recA Streptococcus pneumoniae TIGR4

58.739

98.867

0.581
  recA Streptococcus pneumoniae R6

58.739

98.867

0.581
  recA Streptococcus pneumoniae D39

58.739

98.867

0.581
  recA Bacillus subtilis subsp. subtilis str. 168

63.551

90.935

0.578
  recA Latilactobacillus sakei subsp. sakei 23K

59.941

95.467

0.572
  recA Streptococcus mitis NCTC 12261

61.3

91.501

0.561
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.878

93.201

0.558
  recA Streptococcus mutans UA159

60.372

91.501

0.552
  recA Streptococcus pyogenes NZ131

60.062

91.501

0.55
  recA Lactococcus lactis subsp. cremoris KW2

58.204

91.501

0.533