Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   V1211_RS08705 Genome accession   NZ_CP146065
Coordinates   1739773..1740357 (+) Length   194 a.a.
NCBI ID   WP_011276196.1    Uniprot ID   A0A2A1KAP4
Organism   Staphylococcus haemolyticus strain SPS12     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1734773..1745357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS08675 (V1211_08685) - 1735530..1736897 (-) 1368 WP_107611324.1 isochorismate synthase -
  V1211_RS08680 (V1211_08690) - 1737077..1738015 (+) 939 WP_016931372.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  V1211_RS08685 (V1211_08695) - 1738113..1738667 (-) 555 WP_107611325.1 GNAT family N-acetyltransferase -
  V1211_RS08690 (V1211_08700) - 1738852..1739082 (+) 231 WP_107611326.1 TM2 domain-containing protein -
  V1211_RS08695 (V1211_08705) - 1739162..1739263 (+) 102 WP_011276194.1 SAR1012 family small protein -
  V1211_RS08700 (V1211_08710) - 1739340..1739558 (-) 219 WP_107611327.1 IDEAL domain-containing protein -
  V1211_RS08705 (V1211_08715) comK/comK1 1739773..1740357 (+) 585 WP_011276196.1 competence protein ComK Regulator
  V1211_RS08720 (V1211_08730) - 1740939..1741490 (+) 552 WP_053017801.1 Ltp family lipoprotein -
  V1211_RS08725 (V1211_08735) - 1741537..1742526 (-) 990 WP_107611378.1 lipoate--protein ligase -
  V1211_RS08730 (V1211_08740) - 1742727..1742903 (+) 177 WP_107611379.1 DUF2187 family protein -
  V1211_RS08735 (V1211_08745) - 1742920..1743522 (+) 603 WP_037535503.1 CPBP family glutamic-type intramembrane protease -
  V1211_RS08740 (V1211_08750) - 1743513..1744820 (-) 1308 Protein_1683 transposase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 23002.43 Da        Isoelectric Point: 9.2942

>NTDB_id=941492 V1211_RS08705 WP_011276196.1 1739773..1740357(+) (comK/comK1) [Staphylococcus haemolyticus strain SPS12]
MTNISQSQNTVYIIRKGDMIIKPVIDDYEQTKGSEIWKYDSTIVSSPFKTQKIVERSCKFYGNSYISKKSETQRIAGITS
KPPILLTPLFPTYFFPTHSDRLEENMWINMHYVHEIKPLKNRKCKIIFANHQTLTLNVSYHSIWHQYSNCIFYYYMVDKQ
SRMKSNNPEMPIDYEKTTLNIFEALSHYSLLQDK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=941492 V1211_RS08705 WP_011276196.1 1739773..1740357(+) (comK/comK1) [Staphylococcus haemolyticus strain SPS12]
ATGACAAATATTTCTCAAAGCCAAAATACTGTATATATTATTCGAAAAGGAGATATGATAATCAAACCCGTCATTGATGA
TTATGAGCAAACAAAAGGATCAGAAATATGGAAATATGATTCCACAATAGTTTCAAGCCCATTCAAAACTCAAAAAATCG
TCGAACGCTCATGTAAATTTTATGGTAATAGCTATATTAGTAAGAAATCCGAAACTCAACGAATTGCCGGCATTACTAGT
AAACCACCTATTTTATTGACTCCTCTCTTCCCCACTTATTTTTTCCCTACGCATTCAGACCGTTTAGAAGAAAACATGTG
GATTAATATGCATTATGTACATGAAATTAAACCTCTTAAAAATCGAAAATGTAAAATTATTTTTGCAAATCATCAAACAT
TAACACTTAATGTTTCCTACCACAGTATTTGGCACCAATACTCTAACTGCATTTTTTATTATTACATGGTCGATAAACAA
TCTCGTATGAAGTCAAACAATCCAGAAATGCCAATTGATTATGAGAAAACGACTTTAAATATTTTCGAAGCACTTTCACA
TTATTCACTATTACAAGATAAATAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(11-161)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2A1KAP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

68.617

96.907

0.665
  comK/comK1 Staphylococcus aureus N315

68.617

96.907

0.665