Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   V1211_RS07755 Genome accession   NZ_CP146065
Coordinates   1542186..1543052 (-) Length   288 a.a.
NCBI ID   WP_107614294.1    Uniprot ID   -
Organism   Staphylococcus haemolyticus strain SPS12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1527076..1572611 1542186..1543052 within 0


Gene organization within MGE regions


Location: 1527076..1572611
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS07690 (V1211_07700) rseP 1527931..1529217 (-) 1287 WP_317956023.1 RIP metalloprotease RseP -
  V1211_RS07695 (V1211_07705) - 1529427..1530209 (-) 783 WP_037537321.1 phosphatidate cytidylyltransferase -
  V1211_RS07700 (V1211_07710) - 1530213..1530983 (-) 771 WP_317956021.1 isoprenyl transferase -
  V1211_RS07705 (V1211_07715) frr 1531209..1531763 (-) 555 WP_011275941.1 ribosome recycling factor -
  V1211_RS07710 (V1211_07720) pyrH 1531781..1532503 (-) 723 WP_011275942.1 UMP kinase -
  V1211_RS07715 (V1211_07725) tsf 1532640..1533518 (-) 879 WP_011275943.1 translation elongation factor Ts -
  V1211_RS07720 (V1211_07730) rpsB 1533683..1534471 (-) 789 WP_317956019.1 30S ribosomal protein S2 -
  V1211_RS07725 (V1211_07735) codY 1534738..1535511 (-) 774 WP_011275945.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  V1211_RS07730 (V1211_07740) hslU 1535533..1536936 (-) 1404 WP_317956017.1 ATP-dependent protease ATPase subunit HslU -
  V1211_RS07735 (V1211_07745) hslV 1536996..1537541 (-) 546 WP_011275947.1 ATP-dependent protease subunit HslV -
  V1211_RS07740 (V1211_07750) xerC 1537542..1538435 (-) 894 WP_107637558.1 tyrosine recombinase XerC -
  V1211_RS07745 (V1211_07755) trmFO 1538607..1539914 (-) 1308 WP_037537326.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  V1211_RS07750 (V1211_07760) topA 1539938..1542007 (-) 2070 WP_037537327.1 type I DNA topoisomerase -
  V1211_RS07755 (V1211_07765) dprA 1542186..1543052 (-) 867 WP_107614294.1 DNA-processing protein DprA Machinery gene
  V1211_RS07760 (V1211_07770) - 1543271..1544509 (-) 1239 Protein_1490 aminoacyltransferase -
  V1211_RS07765 (V1211_07775) - 1544531..1544788 (-) 258 Protein_1491 CHAP domain-containing protein -
  V1211_RS07770 (V1211_07780) - 1544900..1544974 (-) 75 Protein_1492 hypothetical protein -
  V1211_RS07775 (V1211_07785) sucD 1545230..1546135 (-) 906 WP_011275953.1 succinate--CoA ligase subunit alpha -
  V1211_RS07780 (V1211_07790) sucC 1546157..1547323 (-) 1167 WP_053017080.1 ADP-forming succinate--CoA ligase subunit beta -
  V1211_RS07785 (V1211_07795) - 1547435..1548202 (-) 768 WP_053017079.1 ribonuclease HII -
  V1211_RS07790 (V1211_07800) ylqF 1548186..1549070 (-) 885 WP_107611438.1 ribosome biogenesis GTPase YlqF -
  V1211_RS07795 (V1211_07805) - 1549307..1551901 (+) 2595 WP_317956010.1 YfhO family protein -
  V1211_RS07800 (V1211_07810) - 1551903..1554512 (+) 2610 WP_107638618.1 YfhO family protein -
  V1211_RS07805 (V1211_07815) rplS 1554669..1555019 (-) 351 WP_037537864.1 50S ribosomal protein L19 -
  V1211_RS07810 (V1211_07820) trmD 1555124..1555861 (-) 738 WP_107611435.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  V1211_RS07815 (V1211_07825) rimM 1555861..1556364 (-) 504 WP_317956007.1 ribosome maturation factor RimM -
  V1211_RS07820 (V1211_07830) rpsP 1556483..1556758 (-) 276 WP_011275962.1 30S ribosomal protein S16 -
  V1211_RS07825 (V1211_07835) ffh 1557492..1558862 (-) 1371 WP_107611433.1 signal recognition particle protein -
  V1211_RS07830 (V1211_07840) - 1558888..1559220 (-) 333 WP_037537868.1 putative DNA-binding protein -
  V1211_RS07835 (V1211_07845) ftsY 1559207..1560430 (-) 1224 WP_037557992.1 signal recognition particle-docking protein FtsY -
  V1211_RS07840 (V1211_07850) smc 1560427..1563996 (-) 3570 WP_317956005.1 chromosome segregation protein SMC -
  V1211_RS07845 (V1211_07855) rnc 1564081..1564818 (-) 738 WP_317956003.1 ribonuclease III -
  V1211_RS07850 (V1211_07860) - 1564904..1565137 (-) 234 WP_001830184.1 acyl carrier protein -
  V1211_RS07855 (V1211_07865) fabG 1565250..1565987 (-) 738 WP_011275968.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  V1211_RS07860 (V1211_07870) fabD 1565977..1566906 (-) 930 WP_107611430.1 ACP S-malonyltransferase -
  V1211_RS07865 (V1211_07875) plsX 1566899..1567885 (-) 987 WP_107611429.1 phosphate acyltransferase PlsX -
  V1211_RS07870 (V1211_07880) fapR 1567887..1568447 (-) 561 WP_107611428.1 transcription factor FapR -
  V1211_RS07875 (V1211_07885) recG 1568583..1570634 (-) 2052 WP_317956001.1 ATP-dependent DNA helicase RecG -
  V1211_RS07880 (V1211_07890) - 1570789..1571592 (-) 804 WP_107611426.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 33210.16 Da        Isoelectric Point: 9.2798

>NTDB_id=941491 V1211_RS07755 WP_107614294.1 1542186..1543052(-) (dprA) [Staphylococcus haemolyticus strain SPS12]
MTNNNILLLKLIWLGYTTQHIHHLLKLNPDFFKFSYTDQLDTIRNWDRMFHNDDFIDKFNNLNEKDILSLLQNHKVSFTT
PFNTNYPRLLKEIYDYPFVLFYQGDPRLLRSSNTLGVVGTRNATEYSAKAMQYLFPKFKQIPLTIISGLAKGADSIAHHF
AIEYQLPTIAVLGFGHMMHYPRETQKLRNIIEEKGLVISEYPPFTSVRRYHFPQRNRLISGLSQGVLITEASVRSGSQIT
IDCALDQNRNIYVLPGSIFNPLTKGNLKRAQEGAMIVTSADDILCDYK

Nucleotide


Download         Length: 867 bp        

>NTDB_id=941491 V1211_RS07755 WP_107614294.1 1542186..1543052(-) (dprA) [Staphylococcus haemolyticus strain SPS12]
ATGACTAACAACAACATATTACTTTTGAAATTAATTTGGTTAGGTTATACGACCCAACACATTCATCATTTATTAAAATT
AAATCCTGATTTTTTTAAATTCTCTTATACTGATCAATTAGATACAATAAGAAATTGGGACAGAATGTTTCATAATGATG
ATTTTATTGATAAATTTAATAATTTAAATGAAAAAGATATTTTGTCACTTTTGCAGAATCACAAAGTAAGTTTTACAACA
CCGTTTAACACTAATTATCCTCGACTGCTAAAAGAAATTTATGATTATCCGTTTGTCTTATTTTACCAAGGTGACCCCCG
TTTATTAAGATCCTCCAATACATTAGGTGTGGTGGGCACAAGAAATGCAACAGAATACTCAGCTAAAGCCATGCAATACT
TATTTCCTAAATTTAAACAAATTCCACTAACTATTATTTCCGGTTTGGCAAAAGGTGCTGATAGCATTGCACATCATTTT
GCTATAGAGTATCAATTACCTACTATAGCTGTTTTAGGTTTTGGTCATATGATGCATTACCCTAGAGAAACGCAAAAATT
ACGCAACATAATTGAAGAAAAAGGTTTAGTTATTAGTGAATATCCGCCATTCACTAGTGTTAGGCGATATCACTTTCCGC
AACGCAATCGTTTGATAAGCGGTCTTTCACAAGGGGTTTTAATAACTGAAGCAAGTGTTAGAAGCGGTAGTCAAATTACA
ATTGATTGCGCATTAGACCAAAATAGAAATATATATGTATTACCAGGTTCAATATTTAATCCACTAACTAAAGGTAATTT
GAAACGAGCTCAAGAAGGGGCGATGATTGTAACCTCAGCTGATGATATCCTATGTGATTATAAATAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

51.93

98.958

0.514
  dprA Staphylococcus aureus N315

51.93

98.958

0.514