Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V1211_RS04125 Genome accession   NZ_CP146065
Coordinates   829378..829776 (+) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain SPS12     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 824378..834776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V1211_RS04095 (V1211_04095) atpD 824654..826066 (+) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -
  V1211_RS04100 (V1211_04100) - 826087..826488 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  V1211_RS04105 (V1211_04105) - 826616..826849 (+) 234 WP_011275245.1 DUF1146 family protein -
  V1211_RS04110 (V1211_04110) murA 826954..828219 (+) 1266 WP_016931214.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V1211_RS04115 (V1211_04115) fabZ 828259..828696 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V1211_RS04120 (V1211_04120) - 828747..829190 (-) 444 WP_317956059.1 YwpF-like family protein -
  V1211_RS04125 (V1211_04125) ssb 829378..829776 (+) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  V1211_RS04130 (V1211_04130) - 830114..830821 (+) 708 WP_107611863.1 transglycosylase family protein -
  V1211_RS04135 (V1211_04135) tenA 831110..831799 (+) 690 WP_317956061.1 thiaminase II -
  V1211_RS04140 (V1211_04140) thiD 831792..832613 (+) 822 WP_317956063.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V1211_RS04145 (V1211_04145) thiM 832606..833397 (+) 792 WP_107611864.1 hydroxyethylthiazole kinase -
  V1211_RS04150 (V1211_04150) thiE 833399..834037 (+) 639 WP_107613753.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=941474 V1211_RS04125 WP_011275249.1 829378..829776(+) (ssb) [Staphylococcus haemolyticus strain SPS12]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=941474 V1211_RS04125 WP_011275249.1 829378..829776(+) (ssb) [Staphylococcus haemolyticus strain SPS12]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAA
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742