Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   V6670_RS05655 Genome accession   NZ_CP145889
Coordinates   1214595..1215659 (+) Length   354 a.a.
NCBI ID   WP_036121272.1    Uniprot ID   A0A0W7YIY0
Organism   Lysinibacillus sp. Y5S-8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1209595..1220659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6670_RS05630 (V6670_05630) - 1210327..1210584 (+) 258 WP_004224939.1 DUF3243 domain-containing protein -
  V6670_RS05635 (V6670_05635) - 1210802..1211587 (+) 786 WP_008178931.1 DUF3388 domain-containing protein -
  V6670_RS05640 (V6670_05640) - 1211604..1212533 (+) 930 WP_186436101.1 RodZ domain-containing protein -
  V6670_RS05645 (V6670_05645) pgsA 1212581..1213159 (+) 579 WP_330493462.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  V6670_RS05650 (V6670_05650) cinA 1213177..1214436 (+) 1260 WP_058843925.1 competence/damage-inducible protein A Machinery gene
  V6670_RS05655 (V6670_05655) recA 1214595..1215659 (+) 1065 WP_036121272.1 recombinase RecA Machinery gene
  V6670_RS05660 (V6670_05660) rny 1216220..1217779 (+) 1560 WP_036121270.1 ribonuclease Y -
  V6670_RS05665 (V6670_05665) - 1217899..1218693 (+) 795 WP_338653048.1 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  V6670_RS05670 (V6670_05670) - 1218713..1219870 (+) 1158 WP_338653050.1 O-antigen ligase family protein -
  V6670_RS05675 (V6670_05675) - 1219939..1220655 (+) 717 WP_338653051.1 Wzz/FepE/Etk N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38174.39 Da        Isoelectric Point: 4.7354

>NTDB_id=940969 V6670_RS05655 WP_036121272.1 1214595..1215659(+) (recA) [Lysinibacillus sp. Y5S-8]
MSDRKAALEQALKQIEKNFGKGSIMKLGERTDLEIATSSSGSLALDAALGVGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQATGGQAAFIDAEHALDPIYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGSINKSKTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEAIKQGNDIVGNRT
KIKIVKNKVAPPFRTAEVDIMYGEGISKEGETVDLGVELDIVQKSGSWYAYGDERLGQGRENAKQYLKENVAVLEEIANK
IRASYGIAASSYTIAAHDEEEMDDELMLLLEEEK

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=940969 V6670_RS05655 WP_036121272.1 1214595..1215659(+) (recA) [Lysinibacillus sp. Y5S-8]
ATGAGTGATCGTAAAGCAGCCTTAGAACAGGCTCTAAAACAAATTGAAAAGAATTTTGGTAAAGGTTCCATCATGAAACT
TGGTGAAAGAACCGATTTAGAAATTGCGACATCTTCAAGTGGTTCGCTAGCACTTGATGCAGCATTAGGCGTAGGTGGTT
ATCCACGTGGACGTATTATCGAAGTATATGGTCCTGAATCATCTGGTAAAACAACAGTTGCTCTACATGCTATTGCAGAA
GTGCAGGCAACAGGTGGACAAGCAGCATTTATCGATGCAGAGCATGCATTAGACCCAATCTATGCACAAAAATTAGGTGT
TAATATTGATGAGCTATTATTATCACAGCCAGATACAGGGGAGCAAGCACTTGAAATTGCAGAAGCATTAGTGCGTAGTG
GTGCTATTGATATTATTGTTATTGACTCTGTTGCTGCCTTAGTGCCAAAAGCAGAAATTGAAGGCGATATGGGTGACTCT
CATGTCGGCTTACAAGCACGTTTGATGTCTCAAGCATTACGTAAGCTTTCAGGTTCGATTAATAAATCAAAAACGATTGC
TATTTTCATTAACCAAATTCGTGAAAAAATTGGTGTCATGTTCGGAAACCCAGAAACAACACCAGGTGGACGTGCGCTGA
AATTCTATAGCTCTGTTCGTTTAGAAGTGCGTCGTGCAGAAGCAATTAAACAAGGTAATGATATTGTTGGTAACCGTACA
AAAATTAAAATTGTTAAAAATAAAGTAGCGCCACCTTTCCGTACAGCTGAGGTAGATATTATGTATGGAGAAGGAATTTC
TAAAGAAGGCGAAACAGTTGATTTAGGTGTAGAATTAGATATTGTGCAAAAAAGTGGTTCTTGGTATGCATATGGTGACG
AACGCCTAGGTCAAGGTCGAGAAAATGCTAAACAGTATTTAAAAGAAAATGTAGCTGTTTTAGAAGAAATCGCTAATAAA
ATTCGAGCTTCTTATGGTATCGCGGCTTCTTCTTATACAATTGCGGCACATGATGAAGAAGAGATGGATGACGAATTAAT
GTTGCTTCTTGAAGAAGAAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0W7YIY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.933

92.373

0.794
  recA Latilactobacillus sakei subsp. sakei 23K

75.767

92.09

0.698
  recA Streptococcus pneumoniae Rx1

66.092

98.305

0.65
  recA Streptococcus pneumoniae D39

66.092

98.305

0.65
  recA Streptococcus pneumoniae R6

66.092

98.305

0.65
  recA Streptococcus pneumoniae TIGR4

66.092

98.305

0.65
  recA Streptococcus mitis SK321

68.788

93.22

0.641
  recA Streptococcus mitis NCTC 12261

68.485

93.22

0.638
  recA Streptococcus pyogenes NZ131

67.988

92.655

0.63
  recA Streptococcus mutans UA159

67.477

92.938

0.627
  recA Lactococcus lactis subsp. cremoris KW2

66.97

93.22

0.624
  recA Neisseria gonorrhoeae strain FA1090

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Neisseria gonorrhoeae MS11

65.653

92.938

0.61
  recA Acinetobacter baylyi ADP1

61.782

98.305

0.607
  recA Acinetobacter baumannii D1279779

61.032

98.588

0.602
  recA Ralstonia pseudosolanacearum GMI1000

64.22

92.373

0.593
  recA Helicobacter pylori strain NCTC11637

64.615

91.808

0.593
  recA Helicobacter pylori 26695

64.308

91.808

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.804

92.09

0.588
  recA Pseudomonas stutzeri DSM 10701

60.819

96.61

0.588
  recA Glaesserella parasuis strain SC1401

59.143

98.87

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.497

92.09

0.585
  recA Vibrio cholerae strain A1552

63.75

90.395

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

90.395

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

91.243

0.573