Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   AAEM60_RS08190 Genome accession   NZ_CP145886
Coordinates   1643974..1644942 (+) Length   322 a.a.
NCBI ID   WP_299740236.1    Uniprot ID   -
Organism   Rossellomorea sp. y25     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1638974..1649942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAEM60_RS08170 (V2W31_08170) clpB 1639295..1641886 (+) 2592 WP_299740228.1 ATP-dependent chaperone ClpB -
  AAEM60_RS08175 (V2W31_08175) - 1641925..1642107 (-) 183 WP_299740230.1 DUF2929 family protein -
  AAEM60_RS08180 (V2W31_08180) - 1642378..1643121 (+) 744 WP_299740232.1 hydrolase -
  AAEM60_RS08185 (V2W31_08185) - 1643144..1643860 (+) 717 WP_299740234.1 hypothetical protein -
  AAEM60_RS08190 (V2W31_08190) med 1643974..1644942 (+) 969 WP_299740236.1 BMP family ABC transporter substrate-binding protein Regulator
  AAEM60_RS08195 (V2W31_08195) comZ 1644939..1645127 (+) 189 WP_299740238.1 ComZ family protein Regulator
  AAEM60_RS08200 (V2W31_08200) - 1645176..1645391 (-) 216 WP_341357801.1 hypothetical protein -
  AAEM60_RS08205 (V2W31_08205) - 1645593..1646525 (+) 933 WP_299740242.1 beta-ketoacyl-ACP synthase III -
  AAEM60_RS08210 (V2W31_08210) fabF 1646570..1647814 (+) 1245 WP_341357802.1 beta-ketoacyl-ACP synthase II -
  AAEM60_RS08215 (V2W31_08215) - 1647911..1648678 (+) 768 WP_341357803.1 DUF2268 domain-containing putative Zn-dependent protease -
  AAEM60_RS08220 (V2W31_08220) - 1648829..1649050 (+) 222 WP_299740246.1 hypothetical protein -
  AAEM60_RS08225 (V2W31_08225) - 1649135..1649884 (+) 750 WP_299740249.1 YjbA family protein -

Sequence

Protein


Download         Length: 322 a.a.        Molecular weight: 35699.93 Da        Isoelectric Point: 4.4026

>NTDB_id=940895 AAEM60_RS08190 WP_299740236.1 1643974..1644942(+) (med) [Rossellomorea sp. y25]
MSKKFYTIFLIVFLIGISGCSAGNSAEIEKVGLLVPETVDDGVWGTKGYKGLLKIQSDYDADVFYKESIKNDTSIKQAVK
AYNDDEVTLVFGHGSEYSKIFNTLSGEYPNMHFVSFNGNATEENTTSLQFKGYAMGFFGGMTAAYQSKTNKVGVIAAFEW
QPEVQGFIDGAKFQKSESELIIEYTNHWDDQDIAFEKLEGLLNQRVDVVYPAGDGYNVSVIEKLKEKGLYAIGYVSDQSD
LGESTVLTSTVQHADKLYGVVAERFANDELDSGNLEFDFEDGVISMGKYSPVIPKDFQAEMKQHVQAYIETGKLPNGKES
KQ

Nucleotide


Download         Length: 969 bp        

>NTDB_id=940895 AAEM60_RS08190 WP_299740236.1 1643974..1644942(+) (med) [Rossellomorea sp. y25]
ATGAGTAAGAAATTTTACACCATTTTCTTGATTGTATTCCTCATTGGAATAAGTGGTTGTTCAGCAGGAAACAGTGCTGA
AATAGAAAAAGTTGGTTTACTGGTTCCGGAAACCGTAGACGATGGGGTTTGGGGAACAAAAGGATACAAAGGATTATTAA
AGATTCAATCCGATTATGATGCTGACGTCTTCTATAAAGAGAGTATAAAGAATGATACATCAATTAAACAAGCGGTAAAA
GCATATAATGATGATGAAGTTACTTTAGTGTTTGGTCACGGAAGTGAATATTCCAAGATATTTAACACCCTTTCCGGTGA
GTATCCCAATATGCATTTTGTAAGCTTTAATGGAAATGCCACAGAGGAGAATACAACCAGTCTACAATTTAAAGGCTATG
CAATGGGCTTCTTCGGAGGCATGACAGCAGCCTATCAATCTAAAACGAATAAAGTCGGAGTGATTGCTGCTTTTGAATGG
CAGCCCGAAGTTCAAGGGTTTATTGATGGAGCGAAATTCCAAAAAAGTGAATCTGAGCTCATTATCGAGTATACCAATCA
CTGGGACGATCAAGACATTGCTTTTGAAAAGCTGGAGGGTTTATTGAATCAGCGAGTCGATGTTGTTTATCCGGCAGGTG
ACGGCTATAATGTATCTGTAATCGAAAAGCTGAAGGAAAAGGGACTCTATGCCATTGGTTATGTATCTGATCAATCTGAT
TTAGGGGAATCCACGGTTTTAACGAGTACGGTGCAGCATGCAGATAAGCTGTATGGTGTAGTTGCAGAAAGGTTCGCAAA
TGACGAGCTCGATTCAGGAAACCTTGAATTTGATTTTGAAGACGGAGTCATTTCCATGGGGAAATATAGTCCTGTCATTC
CAAAAGACTTTCAAGCTGAGATGAAGCAACATGTTCAAGCCTATATCGAAACAGGCAAATTGCCGAATGGAAAGGAATCG
AAGCAATGA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(28-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

51.582

98.137

0.506