Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V6U70_RS02780 Genome accession   NZ_CP145868
Coordinates   554579..555805 (+) Length   408 a.a.
NCBI ID   WP_002886084.1    Uniprot ID   A0AB33ZDT0
Organism   Streptococcus salivarius strain KSS12     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 549579..560805
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS02755 (V6U70_02755) - 550005..551276 (-) 1272 WP_410532737.1 hydroxymethylglutaryl-CoA reductase, degradative -
  V6U70_RS02760 (V6U70_02760) - 551278..552444 (-) 1167 WP_038675548.1 hydroxymethylglutaryl-CoA synthase -
  V6U70_RS02765 (V6U70_02765) - 552915..553775 (+) 861 WP_021144511.1 thymidylate synthase -
  V6U70_RS02770 (V6U70_02770) - 553883..554386 (+) 504 WP_013990945.1 dihydrofolate reductase -
  V6U70_RS02775 (V6U70_02775) - 554391..554561 (+) 171 WP_002886174.1 hypothetical protein -
  V6U70_RS02780 (V6U70_02780) clpX 554579..555805 (+) 1227 WP_002886084.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V6U70_RS02785 (V6U70_02785) yihA 555815..556414 (+) 600 WP_021144508.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  V6U70_RS02790 (V6U70_02790) - 556544..557920 (+) 1377 WP_410532739.1 amino acid permease -
  V6U70_RS02795 (V6U70_02795) mmuM 557932..558882 (+) 951 WP_201036131.1 homocysteine S-methyltransferase -
  V6U70_RS02800 (V6U70_02800) - 558995..559249 (+) 255 WP_002886199.1 DUF1912 family protein -
  V6U70_RS02805 (V6U70_02805) - 559324..559701 (+) 378 WP_084869427.1 helix-hairpin-helix domain-containing protein -
  V6U70_RS02810 (V6U70_02810) plsY 559819..560460 (-) 642 WP_013990943.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45007.36 Da        Isoelectric Point: 4.3489

>NTDB_id=940837 V6U70_RS02780 WP_002886084.1 554579..555805(+) (clpX) [Streptococcus salivarius strain KSS12]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIATKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=940837 V6U70_RS02780 WP_002886084.1 554579..555805(+) (clpX) [Streptococcus salivarius strain KSS12]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACTCCAAAGCCAAAAGAACTTTTGGATATTTTGAACAACTATGTCGTGGGACAAGACCGTGCG
AAACGTGCCTTGGCGGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGACAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGAAGCT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCTGGTTATGTGGGTGAGGACGTGGAAAATATCCTC
CTCAAACTGATCCAAGCGGCAGACTTCAATATTGAACGTGCGGAACGTGGGATCATCTATGTCGACGAGATTGATAAGAT
TGCTAAAAAAGGTGAAAACGTATCAATCACTCGTGACGTTTCTGGTGAAGGGGTTCAACAAGCCCTCTTGAAGATTATCG
AAGGAACAGTAGCTAGCGTTCCACCTCAAGGTGGCCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACGAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCTATTGATGATGACTCATCATACATGCAAGAAATTGTGGCTGAAGATATCCAAAAATTCGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCTGCCCTTGAACAGTTAACGGTGGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAAACAGTATCAAACCCTCTTGTCTTATGATGGAGTTGAACTTGAGTTTGACCAAGA
TGCTCTTGAAGCTATTGCAACTAAGGCAATCGAACGTAAGACTGGTGCACGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTCATGTTTGAAATTCCTAGCCAGGAAGATGTGACTAAGGTTCGTATTACCAAAGAAGCCGTTGACGGTACA
GCTGCTCCAGTTTTGGAAACAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.902
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.284

0.566