Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U70_RS02055 Genome accession   NZ_CP145868
Coordinates   389114..389557 (+) Length   147 a.a.
NCBI ID   WP_247922521.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 384114..394557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS02040 (V6U70_02040) gdhA 385185..386537 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  V6U70_RS02045 (V6U70_02045) - 387112..388359 (+) 1248 WP_410532622.1 hypothetical protein -
  V6U70_RS02050 (V6U70_02050) - 388517..388927 (+) 411 WP_014633541.1 peptide deformylase -
  V6U70_RS02055 (V6U70_02055) rcrR 389114..389557 (+) 444 WP_247922521.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U70_RS02060 (V6U70_02060) rcrP 389561..391375 (+) 1815 WP_410532624.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02065 (V6U70_02065) rcrQ 391365..393143 (+) 1779 WP_410532626.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02070 (V6U70_02070) - 393251..393874 (+) 624 WP_247922524.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17204.68 Da        Isoelectric Point: 9.5834

>NTDB_id=940832 V6U70_RS02055 WP_247922521.1 389114..389557(+) (rcrR) [Streptococcus salivarius strain KSS12]
MHGKDTFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVKYLSDNQDKEIFIKDIEKRLCISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKARDVKYFREAIHEQLLEGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940832 V6U70_RS02055 WP_247922521.1 389114..389557(+) (rcrR) [Streptococcus salivarius strain KSS12]
ATGCATGGAAAAGATACTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAGGT
CCATGGGGTTGAGCATTTAGCTGGCCCACAAGGATTTGCCGTCAAGTATTTGTCTGACAATCAAGATAAAGAAATCTTTA
TCAAAGACATTGAAAAAAGACTATGTATTTCTAAATCAGTGGCTAGTAATTTGGTCAAACGAATGGAAAAAAATGGTTTT
GTTGAGTTGGTGACATCGGACAAGGATAAACGCTACAAGTATGTTCATCTGACAGACTTAGGTAAAAAGAAAGCTCGAGA
TGTCAAATATTTTCGAGAGGCCATCCATGAACAGCTGTTAGAAGGTATTTCCAAAGAAGATGCTGAAACAGCCTTTCGTG
TCTTTCACCAAATTCGTAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(37-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558