Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U70_RS02060 Genome accession   NZ_CP145868
Coordinates   389561..391375 (+) Length   604 a.a.
NCBI ID   WP_410532624.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS12     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 384561..396375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U70_RS02040 (V6U70_02040) gdhA 385185..386537 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  V6U70_RS02045 (V6U70_02045) - 387112..388359 (+) 1248 WP_410532622.1 hypothetical protein -
  V6U70_RS02050 (V6U70_02050) - 388517..388927 (+) 411 WP_014633541.1 peptide deformylase -
  V6U70_RS02055 (V6U70_02055) rcrR 389114..389557 (+) 444 WP_247922521.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U70_RS02060 (V6U70_02060) rcrP 389561..391375 (+) 1815 WP_410532624.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02065 (V6U70_02065) rcrQ 391365..393143 (+) 1779 WP_410532626.1 ABC transporter ATP-binding protein Regulator
  V6U70_RS02070 (V6U70_02070) - 393251..393874 (+) 624 WP_247922524.1 GNAT family N-acetyltransferase -
  V6U70_RS02075 (V6U70_02075) - 394022..394645 (+) 624 WP_013990132.1 GTP pyrophosphokinase family protein -
  V6U70_RS02080 (V6U70_02080) - 394647..395324 (+) 678 WP_247922525.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67022.70 Da        Isoelectric Point: 5.9443

>NTDB_id=940833 V6U70_RS02060 WP_410532624.1 389561..391375(+) (rcrP) [Streptococcus salivarius strain KSS12]
MFKIFKRLTTKELIMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKKFSIPSLLTRTTNDITQLQLVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMENKIHLFSDMVVYSSYAMQVVMGFMMMIIVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKEVGAVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGDITSNMTMGTSDNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELAEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940833 V6U70_RS02060 WP_410532624.1 389561..391375(+) (rcrP) [Streptococcus salivarius strain KSS12]
ATGTTTAAAATTTTTAAACGTTTGACGACAAAAGAGTTAATCATGATTGTCTTAGCGGTGATTTTTGTTTGCTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCGGATATTACGACACTCTTATCAACTAAGGGAACTAAGGCGTCGGATA
TTTTTGCCTGGAATACGGATGCCCCAGGGATGCGAATGCTTTTAATGTCATTTGCAGGCTTTATGGCCTCTGTAGTGGTT
GGTTTCTTAGCTGCCAGAACAGCGGCAAGTTTTACCACCCGTCTTCGTGATGATATCTTCCATCAGGTTCTAGATTTTTC
GGATGCAGAGATCAAGAAATTCTCAATTCCTAGTCTTTTGACCCGTACGACAAATGATATTACCCAATTGCAGCTGGTAC
TTACTATGGGGTTACAGGTTATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGG
AATTGGCTCCTAGCCTTGCTTGTTGCTGTAGCAGTGATTGCTATTCTTATGCTCTTCCTCTTGATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTATAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACCCAAAACAATCTCTTTATTGGT
CGTTCTTTTGCCTTACTGACACCTGTGATGACTGCTGTATCAAGTGGTTTGACACTGGCTATTTATTGGATTGGTGCACA
TTTGATTGAAGATGTTAAGATTCCAACAGATCCAACTAAGATTGCTGGTGCCATGGAAAATAAGATCCATCTTTTTTCAG
ACATGGTGGTTTATTCATCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTATTGTTTTCTTCCTTCTTCCA
CGTGCAGTTGTAGCAGCTGGTCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAGCCTAAAGAGGTGGGTGCTGTCGAATTTGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAAGGTGACACGGTGGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACACTTGTCAAC
CTTATCCCACGTTTTTATGATGCCACGCAAGGGACGATCAAGGTTGACGGTGTCGATGTGCGACATTATGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAGAAGGCAGTGCTTTTCTCAGGTGATATCACGTCAAATATGACGATGGGAA
CGAGCGATAACAGTCCTCTTGATGATGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGTCAACTTAAAGCAGAAGTTGCCCAAGCTGGGTCTAACTTCTCAGGTGGACAGAAGCAACGTTTGGCTATTGC
GCGTGCTTTGGCACGTAAGCCTGAAATCTTGATTTTCGATGATTCCTTCTCAGCCTTGGATTATAAGACCGATCGTAAGT
TACGTCAAGAATTGGCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCG
GACCAAATCTTGGTTCTTGATCAAGGTAAGGTCGTTGGTCAAGGAACCCACAAGGAACTCTTGGCAAATAATGAGGTTTA
CCAAGAAATTGCCTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.595

100

0.687