Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6U69_RS08105 Genome accession   NZ_CP145867
Coordinates   1777796..1779610 (-) Length   604 a.a.
NCBI ID   WP_410533649.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772796..1784610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS08085 (V6U69_08085) - 1773845..1774522 (-) 678 WP_410533641.1 response regulator transcription factor -
  V6U69_RS08090 (V6U69_08090) - 1774524..1775147 (-) 624 WP_410533643.1 GTP pyrophosphokinase family protein -
  V6U69_RS08095 (V6U69_08095) - 1775297..1775920 (-) 624 WP_410533645.1 GNAT family N-acetyltransferase -
  V6U69_RS08100 (V6U69_08100) rcrQ 1776028..1777806 (-) 1779 WP_410533647.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS08105 (V6U69_08105) rcrP 1777796..1779610 (-) 1815 WP_410533649.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS08110 (V6U69_08110) rcrR 1779614..1780057 (-) 444 WP_002890101.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U69_RS08115 (V6U69_08115) - 1780246..1780656 (-) 411 WP_002886693.1 peptide deformylase -
  V6U69_RS08120 (V6U69_08120) - 1780813..1782147 (-) 1335 WP_410533651.1 YfhO family protein -
  V6U69_RS08125 (V6U69_08125) gdhA 1782640..1783992 (-) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67001.66 Da        Isoelectric Point: 6.7126

>NTDB_id=940799 V6U69_RS08105 WP_410533649.1 1777796..1779610(-) (rcrP) [Streptococcus salivarius strain KSS10]
MFKIFKRLTAKELSMIVLAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFTWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKQFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITKIADKNG
NWLLALLVAVAVIAVLMLFLLIMVIPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINDVLDTKSSVSYPENSSEKPKDMGTVEFDDVSFRYSKTSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGNITSNMTMGTSNNGPLDDTKIWEALELAQGKDFVEN
KEGQLKAEVAQAGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTNRKLRQELSEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940799 V6U69_RS08105 WP_410533649.1 1777796..1779610(-) (rcrP) [Streptococcus salivarius strain KSS10]
ATGTTTAAAATTTTTAAACGTTTGACAGCAAAAGAGTTAAGCATGATTGTCTTAGCTGTGATATTTGTTTGTTTGAATGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACGACTCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTACCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCCTTTGCGGGCTTTATGGCCTCAGTAGTGGTT
GGTTTCCTAGCTGCCAGAACAGCAGCAAGTTTTACAACCCGTCTTCGTGATGATATCTTCCATCAAGTTCTAGATTTTTC
GGATGCAGAGATTAAGCAATTCTCCATTCCTAGTCTTTTGACCCGCACGACAAATGATATTACCCAATTACAGATGGTAC
TGACCATGGGACTACAGGTCATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAAGATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCCGTTCTCATGCTCTTCCTCTTAATTATGGTTATACCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTACAACGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCCAATACTGATTTGACTCAAAACAACCTCTTTATCGGT
CGTTCTTTTGCCTTGCTAACACCGGTAATGACTGCTGTATCCAGCGGGTTGACACTGGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACGAAAATTGCTGGTGCCATGGAAGACAAGGTCCATCTCTTCTCAG
ATATGGTTGTCTATTCGTCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCCGTTGTAGCAGCTGGCCGTATCAATGATGTTCTAGATACCAAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGACATGGGCACTGTCGAATTCGATGATGTTTCCTTCCGTTATTCTAAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAGGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAT
CTTATCCCACGATTTTATGATGCCACGCAAGGAACCATCAAGGTTGACGGTGTGGATGTACGACATTATGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAAAAGGCTGTGCTTTTCTCAGGTAATATCACGTCAAATATGACAATGGGAA
CGAGCAATAATGGTCCTCTAGATGACACTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGCCAACTTAAGGCAGAAGTGGCTCAAGCTGGGTCTAACTTCTCAGGTGGCCAGAAGCAACGTTTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATTTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCAATCGTAAAC
TGCGTCAAGAATTATCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCT
GATCAAATCTTGGTACTTGATCAAGGTAAAGTAGTCGGGCAAGGAACCCACAAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCTTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

67.769

100

0.679