Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U69_RS08100 Genome accession   NZ_CP145867
Coordinates   1776028..1777806 (-) Length   592 a.a.
NCBI ID   WP_410533647.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS10     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1771028..1782806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U69_RS08070 (V6U69_08070) frr 1771061..1771618 (-) 558 WP_002885567.1 ribosome recycling factor -
  V6U69_RS08075 (V6U69_08075) pyrH 1771633..1772370 (-) 738 WP_002885551.1 UMP kinase -
  V6U69_RS08080 (V6U69_08080) - 1772608..1773831 (-) 1224 WP_410533639.1 sensor histidine kinase -
  V6U69_RS08085 (V6U69_08085) - 1773845..1774522 (-) 678 WP_410533641.1 response regulator transcription factor -
  V6U69_RS08090 (V6U69_08090) - 1774524..1775147 (-) 624 WP_410533643.1 GTP pyrophosphokinase family protein -
  V6U69_RS08095 (V6U69_08095) - 1775297..1775920 (-) 624 WP_410533645.1 GNAT family N-acetyltransferase -
  V6U69_RS08100 (V6U69_08100) rcrQ 1776028..1777806 (-) 1779 WP_410533647.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS08105 (V6U69_08105) rcrP 1777796..1779610 (-) 1815 WP_410533649.1 ABC transporter ATP-binding protein Regulator
  V6U69_RS08110 (V6U69_08110) rcrR 1779614..1780057 (-) 444 WP_002890101.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U69_RS08115 (V6U69_08115) - 1780246..1780656 (-) 411 WP_002886693.1 peptide deformylase -
  V6U69_RS08120 (V6U69_08120) - 1780813..1782147 (-) 1335 WP_410533651.1 YfhO family protein -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65070.00 Da        Isoelectric Point: 4.9487

>NTDB_id=940798 V6U69_RS08100 WP_410533647.1 1776028..1777806(-) (rcrQ) [Streptococcus salivarius strain KSS10]
MENKPKTSSYKRLKPYIKGFPIPFVLAIVGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVTSIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASEESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESGKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940798 V6U69_RS08100 WP_410533647.1 1776028..1777806(-) (rcrQ) [Streptococcus salivarius strain KSS10]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCCAATTCCCTTTGTCCTTGC
GATTGTTGGAGCAATTATTTCAGCAGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATTACACCTACCAAAATGGGGACGATTCCAGGTATTGATTTGGATAAGGTGACAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCTATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACGGTTGCGACGGTTACACAACGCTTTTCACAACG
TTTTCGTACGGCTATCCAAAAGAAAATCAATAGTGTTCCCCTTAATTATTTTGACAGTCATTCTCAAGGGGACACCCTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCTCTTAGTCAAGGTCTGGGTACCCTAATTACTTCAAGTGTTCTC
TTGGTCGCAGCCATTATTATGATGTTTTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTCATCATGGGTTTCTCACAACCCCTTTTCAAACGTCAACAAGAAAATTTGGCTAACATTAATGGAT
ATATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGTTACAATGCATCTGAAGAAAGTAGTCAAGCTTTCAAGGGG
CTTAATGATAAGCTCTATAAATCGATGTGGCAATCTCAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTACGTCATGGTCTGTCTTGTGGGAGCTATTAAGGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACTTATGTTCGTATTTTCTCACAACCTCTTTCTCAAATTGCACAAGGGATTACACAGCTCCAGTCAGCCACT
GCAGCTATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGATGACGAATCAGGTAAGACAGCTGAATTGACAGA
TACTAAAGGTCAAGTTGTCTTTGATCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGATTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATTGTTGGTCCAACAGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGCCGTATCACCATTGACGGTGTGGATACGAACGACATGAAGCGTGAGACTGTTCATGACCA
ATTTTCTATGGTGCTTCAGGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAAAATATTT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTTATCACCACACTTCCAAAAGGTTATGACACT
TATTTGGATGACTCTGTGACATTATCAGTTGGTCAGAAACAGCTCTTGACCATTGCACGTGCCCTTCTGAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCTGTTGACACCAGAACAGAAGAATTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCCCACCGCTTATCAACTATTAGAAATGCTGATCTTATCCTTGTGATGAAAGAT
GGGAATATTATTGAACAAGGAAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

68.919

100

0.689