Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V6U67_RS02835 Genome accession   NZ_CP145865
Coordinates   565993..567219 (+) Length   408 a.a.
NCBI ID   WP_002886084.1    Uniprot ID   A0AB33ZDT0
Organism   Streptococcus salivarius strain KSS8     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 560993..572219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U67_RS02810 (V6U67_02815) - 561418..562689 (-) 1272 WP_013990948.1 hydroxymethylglutaryl-CoA reductase, degradative -
  V6U67_RS02815 (V6U67_02820) - 562691..563857 (-) 1167 WP_272126126.1 hydroxymethylglutaryl-CoA synthase -
  V6U67_RS02820 (V6U67_02825) - 564329..565189 (+) 861 WP_021144511.1 thymidylate synthase -
  V6U67_RS02825 (V6U67_02830) - 565297..565800 (+) 504 WP_013990945.1 dihydrofolate reductase -
  V6U67_RS02830 (V6U67_02835) - 565805..565975 (+) 171 WP_022495919.1 hypothetical protein -
  V6U67_RS02835 (V6U67_02840) clpX 565993..567219 (+) 1227 WP_002886084.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V6U67_RS02840 (V6U67_02845) yihA 567229..567828 (+) 600 WP_002885996.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  V6U67_RS02845 (V6U67_02850) - 567958..569334 (+) 1377 WP_022495918.1 amino acid permease -
  V6U67_RS02850 (V6U67_02855) mmuM 569346..570296 (+) 951 WP_073687514.1 homocysteine S-methyltransferase -
  V6U67_RS02855 (V6U67_02860) - 570409..570663 (+) 255 WP_002886199.1 DUF1912 family protein -
  V6U67_RS02860 (V6U67_02865) - 570738..571115 (+) 378 WP_002885939.1 helix-hairpin-helix domain-containing protein -
  V6U67_RS02865 (V6U67_02870) plsY 571233..571874 (-) 642 WP_272126133.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45007.36 Da        Isoelectric Point: 4.3489

>NTDB_id=940639 V6U67_RS02835 WP_002886084.1 565993..567219(+) (clpX) [Streptococcus salivarius strain KSS8]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIATKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=940639 V6U67_RS02835 WP_002886084.1 565993..567219(+) (clpX) [Streptococcus salivarius strain KSS8]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACTCCAAAGCCAAAAGAACTTTTGGATATTTTGAACAACTATGTCGTGGGACAAGACCGTGCG
AAACGTGCCTTGGCGGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGACAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGAAGCT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCTGGTTATGTGGGTGAGGACGTGGAAAATATCCTC
CTCAAACTGATCCAAGCGGCAGACTTCAATATTGAACGTGCGGAACGTGGGATCATCTATGTCGACGAGATTGATAAGAT
TGCTAAAAAAGGTGAAAACGTATCAATCACTCGTGACGTTTCTGGTGAAGGGGTTCAACAAGCCCTCTTGAAGATTATCG
AAGGAACAGTAGCTAGCGTTCCACCTCAAGGTGGCCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACGAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCTATTGATGATGACTCATCATACATGCAAGAAATTGTGGCTGAAGATATCCAAAAATTCGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCTGCCCTTGAACAGTTAACGGTGGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAAACAGTATCAAACCCTCTTGTCTTATGATGGAGTTGAACTTGAGTTTGACCAAGA
TGCTCTTGAAGCTATTGCAACTAAGGCAATCGAACGTAAGACTGGTGCACGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTCATGTTTGAAATTCCTAGCCAGGAAGATGTGACTAAGGTTCGTATTACCAAAGAAGCCGTTGACGGTACA
GCTGCTCCAGTTTTGGAAACAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.902
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.284

0.566