Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6U65_RS08695 Genome accession   NZ_CP145863
Coordinates   1903681..1904199 (-) Length   172 a.a.
NCBI ID   WP_048790101.1    Uniprot ID   A0A3E4XK45
Organism   Streptococcus salivarius strain KSS6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1898681..1909199
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS08675 (V6U65_08670) - 1900594..1901538 (+) 945 WP_410532370.1 magnesium transporter CorA family protein -
  V6U65_RS08680 (V6U65_08675) - 1901608..1902279 (+) 672 WP_013991182.1 DUF1129 domain-containing protein -
  V6U65_RS08685 (V6U65_08680) - 1902396..1903277 (+) 882 WP_410532371.1 DUF4300 family protein -
  V6U65_RS08690 (V6U65_08685) rpsR 1903400..1903639 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6U65_RS08695 (V6U65_08690) ssb 1903681..1904199 (-) 519 WP_048790101.1 single-stranded DNA-binding protein Machinery gene
  V6U65_RS08700 (V6U65_08695) rpsF 1904211..1904501 (-) 291 WP_002884188.1 30S ribosomal protein S6 -
  V6U65_RS08705 (V6U65_08700) - 1904707..1905660 (+) 954 WP_410532372.1 hypothetical protein -
  V6U65_RS08710 (V6U65_08705) mutY 1906828..1907979 (+) 1152 WP_410532373.1 A/G-specific adenine glycosylase -
  V6U65_RS08715 (V6U65_08710) tnpA 1908436..1908900 (+) 465 WP_410532374.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18567.29 Da        Isoelectric Point: 4.9163

>NTDB_id=940531 V6U65_RS08695 WP_048790101.1 1903681..1904199(-) (ssb) [Streptococcus salivarius strain KSS6]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSSSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940531 V6U65_RS08695 WP_048790101.1 1903681..1904199(-) (ssb) [Streptococcus salivarius strain KSS6]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAACGTTGCTGTTGC
AACATTCAGCCTTGCGGTTAACCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTTTACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAGTTCATTCGGTGGAGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAACCTGCACAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AATCCAATGGATATTTCAGATGACGATCTCCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3E4XK45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.062

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.763

100

0.581