Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V6U65_RS07975 Genome accession   NZ_CP145863
Coordinates   1751375..1752409 (-) Length   344 a.a.
NCBI ID   WP_371748832.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS6     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1746375..1757409
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U65_RS07950 (V6U65_07945) ilvD 1746646..1748364 (-) 1719 WP_014632703.1 dihydroxy-acid dehydratase -
  V6U65_RS07955 (V6U65_07950) - 1748477..1749658 (+) 1182 WP_410532338.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U65_RS07965 (V6U65_07960) trmB 1749875..1750516 (-) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U65_RS07970 (V6U65_07965) ccrZ 1750526..1751317 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U65_RS07975 (V6U65_07970) pptB 1751375..1752409 (-) 1035 WP_371748832.1 ABC transporter permease Regulator
  V6U65_RS07980 (V6U65_07975) pptA 1752409..1753140 (-) 732 WP_014634937.1 ABC transporter ATP-binding protein Regulator
  V6U65_RS07985 (V6U65_07980) - 1753205..1753624 (+) 420 WP_014634938.1 HIT family protein -
  V6U65_RS07990 (V6U65_07985) - 1753621..1753920 (+) 300 WP_014634939.1 hypothetical protein -
  V6U65_RS07995 (V6U65_07990) - 1754568..1756673 (-) 2106 WP_289092916.1 AAA family ATPase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39917.36 Da        Isoelectric Point: 10.5986

>NTDB_id=940526 V6U65_RS07975 WP_371748832.1 1751375..1752409(-) (pptB) [Streptococcus salivarius strain KSS6]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQSLIFILVIPLFLALGLPVWGVILVAVAMAILKYFIFQKKAQPFYKQSG
LNWTEAIAAENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAICLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=940526 V6U65_RS07975 WP_371748832.1 1751375..1752409(-) (pptB) [Streptococcus salivarius strain KSS6]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTCTTTAATGATCA
CTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTATTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGAATC
CGTGGGCAATCATTCTTGGTTTGCTAGTGCTTTGTCTTCTATTGCCTTTCTGGGGGAATATTGCGACTTATTTAGAGCCA
GCTGATAAGCATTACCTTTTGGTGAAGGAAGAAGAGGTGTTAGACCATGTTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTAATCGTACAAAGCCTGATTTTTATTTTGGTTATTCCGCTCTTTTTAGCCTTGGGACTTCCAGTTTGGGGAGTTA
TCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTACTTCATTTTTCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCTGGA
CTGAATTGGACTGAGGCTATTGCAGCGGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAAGGGATTACGTCGAGTGTTAAACGCCGTGCTTATTTGGATGGTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CTTGGTACAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGGGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTAACA
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTGCTCTTTCA
GCTCACGGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTTAGC
CTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

97.384

100

0.974
  pptB Streptococcus thermophilus LMD-9

93.314

100

0.933