Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   V6U63_RS02845 Genome accession   NZ_CP145861
Coordinates   568317..569543 (+) Length   408 a.a.
NCBI ID   WP_002886084.1    Uniprot ID   A0AB33ZDT0
Organism   Streptococcus salivarius strain KSS3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 563317..574543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS02820 (V6U63_02825) - 563742..565013 (-) 1272 WP_349955106.1 hydroxymethylglutaryl-CoA reductase, degradative -
  V6U63_RS02825 (V6U63_02830) - 565015..566181 (-) 1167 WP_195914474.1 hydroxymethylglutaryl-CoA synthase -
  V6U63_RS02830 (V6U63_02835) - 566652..567512 (+) 861 WP_084914850.1 thymidylate synthase -
  V6U63_RS02835 (V6U63_02840) - 567621..568124 (+) 504 WP_002885904.1 dihydrofolate reductase -
  V6U63_RS02840 (V6U63_02845) - 568129..568299 (+) 171 WP_002886174.1 hypothetical protein -
  V6U63_RS02845 (V6U63_02850) clpX 568317..569543 (+) 1227 WP_002886084.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  V6U63_RS02850 (V6U63_02855) yihA 569553..570152 (+) 600 WP_021144508.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  V6U63_RS02855 (V6U63_02860) - 570282..571658 (+) 1377 WP_245084451.1 amino acid permease -
  V6U63_RS02860 (V6U63_02865) mmuM 571670..572620 (+) 951 WP_245084453.1 homocysteine S-methyltransferase -
  V6U63_RS02865 (V6U63_02870) - 572733..572987 (+) 255 WP_002886199.1 DUF1912 family protein -
  V6U63_RS02870 (V6U63_02875) - 573062..573439 (+) 378 WP_002885939.1 helix-hairpin-helix domain-containing protein -
  V6U63_RS02875 (V6U63_02880) plsY 573557..574198 (-) 642 WP_245084455.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45007.36 Da        Isoelectric Point: 4.3489

>NTDB_id=940370 V6U63_RS02845 WP_002886084.1 568317..569543(+) (clpX) [Streptococcus salivarius strain KSS3]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGVFICNECVALSQEIIREEMAEEVLADLAETPKPKELLDILNNYVVGQDRA
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDDSSYMQEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIATKAIERKTGARGLRSIIEEVMMDVMFEIPSQEDVTKVRITKEAVDGT
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=940370 V6U63_RS02845 WP_002886084.1 568317..569543(+) (clpX) [Streptococcus salivarius strain KSS3]
ATGGCTGGAAATCGTAATGAAGAAATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTAAAGAAAATTATCGC
TGGGAATGGCGTCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAATGGCAGAAGAAGTTT
TGGCTGACTTGGCTGAAACTCCAAAGCCAAAAGAACTTTTGGATATTTTGAACAACTATGTCGTGGGACAAGACCGTGCG
AAACGTGCCTTGGCGGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGACAATGATGTGGA
TTTGCAAAAATCAAATATTCTCATGATTGGACCAACTGGTTCAGGGAAGACTTTCTTGGCTCAGACCTTGGCTCGAAGCT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCTGGTTATGTGGGTGAGGACGTGGAAAATATCCTC
CTCAAACTGATCCAAGCGGCAGACTTCAATATTGAACGTGCGGAACGTGGGATCATCTATGTCGACGAGATTGATAAGAT
TGCTAAAAAAGGTGAAAACGTATCAATCACTCGTGACGTTTCTGGTGAAGGGGTTCAACAAGCCCTCTTGAAGATTATCG
AAGGAACAGTAGCTAGCGTTCCACCTCAAGGTGGCCGTAAACACCCTAACCAAGAGATGATTCAAATTGATACGAAGAAT
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGTTT
TGGTCAAAATAATAAGGCTATTGATGATGACTCATCATACATGCAAGAAATTGTGGCTGAAGATATCCAAAAATTCGGTC
TTATCCCTGAGTTTATCGGACGTTTGCCAGTCCTTGCTGCCCTTGAACAGTTAACGGTGGACGACTTGGTTCGTATCTTG
ACAGAGCCTAGAAATGCCTTGGTTAAACAGTATCAAACCCTCTTGTCTTATGATGGAGTTGAACTTGAGTTTGACCAAGA
TGCTCTTGAAGCTATTGCAACTAAGGCAATCGAACGTAAGACTGGTGCACGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGACGTCATGTTTGAAATTCCTAGCCAGGAAGATGTGACTAAGGTTCGTATTACCAAAGAAGCCGTTGACGGTACA
GCTGCTCCAGTTTTGGAAACAGCGTAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

89.976

100

0.902
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.606

98.284

0.566