Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6T26_RS08095 Genome accession   NZ_CP145858
Coordinates   1760817..1761260 (-) Length   147 a.a.
NCBI ID   WP_064523740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755817..1766260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS08080 (V6T26_08075) - 1756500..1757123 (-) 624 WP_155222314.1 GNAT family N-acetyltransferase -
  V6T26_RS08085 (V6T26_08080) rcrQ 1757231..1759009 (-) 1779 WP_410541210.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS08090 (V6T26_08085) rcrP 1758999..1760813 (-) 1815 WP_410541211.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS08095 (V6T26_08090) rcrR 1760817..1761260 (-) 444 WP_064523740.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6T26_RS08100 (V6T26_08095) - 1761449..1761859 (-) 411 WP_002886693.1 peptide deformylase -
  V6T26_RS08105 (V6T26_08100) - 1762016..1763557 (-) 1542 WP_227853284.1 YfhO family protein -
  V6T26_RS08110 (V6T26_08105) gdhA 1763844..1765196 (-) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17064.44 Da        Isoelectric Point: 8.5092

>NTDB_id=940263 V6T26_RS08095 WP_064523740.1 1760817..1761260(-) (rcrR) [Streptococcus salivarius strain KSS11]
MHGKDPFSDFREIINAMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHEQLLEGISKEDAETAFRVFHQIHKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940263 V6T26_RS08095 WP_064523740.1 1760817..1761260(-) (rcrR) [Streptococcus salivarius strain KSS11]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATGGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCGGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCCAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTATTAGAAGGCATTTCGAAAGAGGATGCTGAAACAGCTTTTCGGG
TCTTTCACCAAATTCATAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558