Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   V6T26_RS08090 Genome accession   NZ_CP145858
Coordinates   1758999..1760813 (-) Length   604 a.a.
NCBI ID   WP_410541211.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1753999..1765813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS08070 (V6T26_08065) - 1755048..1755725 (-) 678 WP_410531808.1 response regulator transcription factor -
  V6T26_RS08075 (V6T26_08070) - 1755727..1756350 (-) 624 WP_410531807.1 GTP pyrophosphokinase family protein -
  V6T26_RS08080 (V6T26_08075) - 1756500..1757123 (-) 624 WP_155222314.1 GNAT family N-acetyltransferase -
  V6T26_RS08085 (V6T26_08080) rcrQ 1757231..1759009 (-) 1779 WP_410541210.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS08090 (V6T26_08085) rcrP 1758999..1760813 (-) 1815 WP_410541211.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS08095 (V6T26_08090) rcrR 1760817..1761260 (-) 444 WP_064523740.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6T26_RS08100 (V6T26_08095) - 1761449..1761859 (-) 411 WP_002886693.1 peptide deformylase -
  V6T26_RS08105 (V6T26_08100) - 1762016..1763557 (-) 1542 WP_227853284.1 YfhO family protein -
  V6T26_RS08110 (V6T26_08105) gdhA 1763844..1765196 (-) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 67015.55 Da        Isoelectric Point: 5.7403

>NTDB_id=940262 V6T26_RS08090 WP_410541211.1 1758999..1760813(-) (rcrP) [Streptococcus salivarius strain KSS11]
MFKIFKRLTAKELSMIILAVIFVCLNVYLNLKIPDYMSDITTLLSTKGTKASDIFAWNTDAPGMRMLLMSFAGFMASVVV
GFLAARTAASFTTRLRDDIFHQVLDFSDAEIKQFSIPSLLTRTTNDITQLQMVLTMGLQVITQGPIMAIWAITNIADKNG
NWLLALLVAVAVIAILMLFLLIMVMPKQRLIQTLTDKLNSVTRESLTGIRVVRAYNAESYQEDKFEKANTDLTQNNLFIG
RSFALLTPVMTAVSSGLTLAIYWIGAHLIEDVKIPTDPTKIAGAMEDKVHLFSDMVVYSSYAMQVVMGFMMMIVVFFLLP
RAVVAAGRINEVLDTQSSVSYPENSSEKPKDVGTVEFDDVSFRYSETSEPVLEHVSFKAKKGDTVAFIGSTGSGKSTLVN
LIPRFYDATQGTIKVDGVDVRHYDHETLHNIVGYIPQKAVLFSGNITSNMTMGTSNNSPLDDAKIWEALELAQGKDFVEN
KEGQLKAEVAQVGSNFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDRKLRQELSEKTQDMTKLIVAQRISTIMDA
DQILVLDQGKVVGQGTHKELLANNEVYQEIAYSQLSKEELENGK

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=940262 V6T26_RS08090 WP_410541211.1 1758999..1760813(-) (rcrP) [Streptococcus salivarius strain KSS11]
ATGTTTAAAATTTTTAAACGTTTGACAGCAAAAGAGTTAAGCATGATTATCTTAGCTGTGATATTTGTTTGTTTGAACGT
CTATCTAAACTTGAAAATTCCAGACTATATGTCTGACATTACGACCCTCTTATCAACCAAGGGGACTAAGGCGTCGGATA
TTTTTGCCTGGAATACAGATGCCCCAGGGATGCGAATGCTTTTAATGTCTTTTGCGGGGTTTATGGCCTCAGTAGTGGTT
GGTTTCCTAGCTGCCAGAACAGCAGCAAGTTTTACAACCCGTCTTCGTGATGATATCTTCCATCAAGTTCTAGATTTTTC
GGATGCCGAGATTAAGCAATTCTCCATTCCTAGTCTTTTGACCCGCACGACAAATGATATTACCCAATTACAGATGGTAC
TGACCATGGGACTACAGGTCATTACACAGGGGCCTATCATGGCCATTTGGGCGATTACAAATATTGCCGATAAAAATGGA
AATTGGCTCCTTGCCTTGCTTGTCGCTGTGGCAGTGATTGCTATTCTCATGCTTTTCCTCTTAATTATGGTTATGCCTAA
GCAACGCTTGATTCAAACTCTGACCGATAAACTGAATAGCGTAACGCGTGAATCTCTTACAGGAATTCGTGTGGTGCGTG
CCTACAATGCCGAAAGTTATCAAGAGGATAAATTTGAAAAGGCAAATACTGATTTGACCCAAAACAACCTATTTATCGGT
CGTTCTTTTGCTTTGCTAACACCGGTAATGACTGCTGTATCCAGCGGTTTGACACTGGCTATTTATTGGATTGGTGCGCA
TCTGATTGAAGATGTTAAGATTCCAACAGATCCAACGAAAATTGCTGGTGCCATGGAAGACAAGGTCCATCTCTTCTCAG
ATATGGTTGTCTATTCGTCTTATGCCATGCAGGTTGTTATGGGATTCATGATGATGATTGTCGTTTTCTTCCTTCTTCCA
CGTGCCGTTGTAGCAGCTGGCCGTATCAATGAAGTTCTAGATACCCAATCTTCAGTCTCTTACCCTGAAAATAGTTCTGA
AAAACCTAAAGACGTGGGCACTGTCGAATTCGATGATGTTTCCTTCCGTTATTCTGAAACTTCAGAGCCTGTTTTGGAGC
ATGTTAGCTTCAAAGCTAAAAAGGGTGACACGGTTGCCTTTATTGGTTCGACTGGATCTGGTAAATCAACGCTTGTCAAC
CTTATCCCACGATTTTATGATGCCACGCAAGGAACTATCAAGGTTGACGGTGTGGATGTACGACATTATGACCACGAAAC
CTTGCACAATATAGTCGGTTATATTCCACAAAAGGCTGTGCTTTTCTCAGGTAATATCACGTCAAATATGACAATGGGAA
CGAGCAATAATAGTCCCCTAGATGACGCTAAGATTTGGGAAGCTCTCGAATTGGCTCAAGGAAAAGACTTTGTTGAAAAT
AAAGAAGGCCAACTTAAGGCAGAAGTGGCTCAAGTGGGGTCTAACTTCTCAGGTGGCCAGAAGCAACGTTTGGCTATTGC
GCGTGCACTTGCCCGTAAGCCTGAAATCTTGATTTTTGACGATTCCTTCTCAGCTTTGGACTATAAGACCGATCGTAAAC
TGCGTCAAGAATTGTCTGAAAAAACACAAGATATGACCAAGTTGATTGTTGCTCAACGTATCTCTACTATTATGGATGCT
GATCAAATCTTGGTACTTGATCAAGGTAAAGTAGTCGGGCAAGGAACCCACAAGGAACTCTTGGCTAACAATGAGGTTTA
CCAAGAAATTGCTTATTCACAATTGTCTAAGGAGGAGTTAGAAAATGGAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(16-271)

ABC transporter (ABC_tran)

(372-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

68.099

100

0.682