Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6511_RS00825 Genome accession   NZ_CP145818
Coordinates   151791..152369 (+) Length   192 a.a.
NCBI ID   WP_138463689.1    Uniprot ID   -
Organism   Lactobacillus delbrueckii subsp. lactis strain CKDB001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 146791..157369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6511_RS00810 (V6511_00810) gyrB 146796..148757 (+) 1962 WP_206349631.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  V6511_RS00815 (V6511_00815) gyrA 148770..151241 (+) 2472 WP_231533756.1 DNA gyrase subunit A -
  V6511_RS00820 (V6511_00820) rpsF 151457..151750 (+) 294 WP_011677863.1 30S ribosomal protein S6 -
  V6511_RS00825 (V6511_00825) ssb 151791..152369 (+) 579 WP_138463689.1 single-stranded DNA-binding protein Machinery gene
  V6511_RS00830 (V6511_00830) rpsR 152396..152632 (+) 237 WP_002879432.1 30S ribosomal protein S18 -
  V6511_RS00835 (V6511_00835) - 152773..154794 (+) 2022 WP_130183308.1 DHH family phosphoesterase -
  V6511_RS00840 (V6511_00840) rplI 154817..155272 (+) 456 WP_013438865.1 50S ribosomal protein L9 -
  V6511_RS00845 (V6511_00845) dnaB 155296..156666 (+) 1371 WP_130183309.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 20679.37 Da        Isoelectric Point: 4.5431

>NTDB_id=940138 V6511_RS00825 WP_138463689.1 151791..152369(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain CKDB001]
MINNVVLVGRLTRDPELRTTGSGISVATFILAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNGGFGGQGQSQNTGFNTGFGGGSGYANDNAFGSPAQSNGPANAGFN
EDNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 579 bp        

>NTDB_id=940138 V6511_RS00825 WP_138463689.1 151791..152369(+) (ssb) [Lactobacillus delbrueckii subsp. lactis strain CKDB001]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCATTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCTGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGAATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACGGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACGACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAAT
GAAGATAACAAGAAAGATGCCGGCGGAGACACGAACACTAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAA
TGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.031

100

0.583
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.875

100

0.469