Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   ACETQM_RS23835 Genome accession   NZ_CP169755
Coordinates   4913344..4914369 (+) Length   341 a.a.
NCBI ID   WP_000644904.1    Uniprot ID   P0ACN8
Organism   Escherichia coli strain AH50     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4908344..4919369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACETQM_RS23825 (ACETQM_23825) rpmE 4910575..4910787 (-) 213 WP_000710769.1 50S ribosomal protein L31 -
  ACETQM_RS23830 (ACETQM_23830) priA 4910990..4913188 (+) 2199 WP_022646377.1 primosomal protein N' Machinery gene
  ACETQM_RS23835 (ACETQM_23835) cytR 4913344..4914369 (+) 1026 WP_000644904.1 DNA-binding transcriptional regulator CytR Regulator
  ACETQM_RS23840 (ACETQM_23840) ftsN 4914461..4915420 (+) 960 WP_000068834.1 cell division protein FtsN -
  ACETQM_RS23845 (ACETQM_23845) hslV 4915513..4916043 (+) 531 WP_000208242.1 ATP-dependent protease subunit HslV -
  ACETQM_RS23850 (ACETQM_23850) hslU 4916053..4917384 (+) 1332 WP_001293344.1 HslU--HslV peptidase ATPase subunit -
  ACETQM_RS23855 (ACETQM_23855) menA 4917451..4918377 (+) 927 WP_001305044.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  ACETQM_RS23860 (ACETQM_23860) rraA 4918470..4918955 (+) 486 WP_000872908.1 ribonuclease E activity regulator RraA -
  ACETQM_RS23865 (ACETQM_23865) zapB 4919040..4919285 (-) 246 WP_001296623.1 septal ring assembly protein ZapB -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37819.78 Da        Isoelectric Point: 6.3842

>NTDB_id=940138 ACETQM_RS23835 WP_000644904.1 4913344..4914369(+) (cytR) [Escherichia coli strain AH50]
MKAKKQETAATMKDVALKAKVSTATVSRALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVKRNESRTILVIVPDICDP
FFSEIIRGIEVTAANHGYLVLIGDCAHQNQQEKTFIDLIITKQIDGMLLLGSRLPFDASIEEQRNLPPMVMANEFAPELE
LPTVHIDNLTAAFDAVNYLYEQGHKRIGCIAGPEEMPLCHYRLQGYVQALRRCGIMVDPQYIARGDFTFEAGSKAMQQLL
DLPQPPTAVFCHSDVMALGALSQAKRQGLKVPEDLSIIGFDNIDLTQFCDPPLTTIAQPRYEIGREAMLLLLDQMQGQHV
GSGSRLMDCELIIRGSTRALP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=940138 ACETQM_RS23835 WP_000644904.1 4913344..4914369(+) (cytR) [Escherichia coli strain AH50]
GTGAAAGCGAAGAAGCAGGAAACTGCCGCGACCATGAAAGACGTTGCCCTCAAGGCAAAAGTCTCTACAGCGACTGTCTC
CCGAGCATTAATGAATCCCGATAAAGTCTCCCAGGCCACCCGTAATCGGGTTGAAAAAGCGGCCCGGGAAGTGGGTTATT
TACCGCAGCCTATGGGGCGCAACGTCAAGCGTAATGAATCCCGCACCATTCTGGTGATTGTCCCGGATATCTGCGACCCT
TTCTTTAGCGAAATTATTCGCGGTATCGAAGTTACGGCGGCAAATCACGGATATCTGGTGCTGATTGGCGACTGTGCGCA
TCAAAATCAGCAGGAAAAAACCTTTATCGATTTGATCATCACCAAGCAAATTGATGGCATGTTGCTGCTGGGTTCAAGGC
TGCCGTTTGATGCCAGCATTGAGGAACAGCGTAATCTGCCGCCGATGGTGATGGCGAACGAATTTGCACCGGAACTGGAG
CTACCTACCGTTCATATAGACAATCTGACCGCCGCATTTGATGCAGTAAATTATTTATATGAGCAAGGGCATAAACGGAT
TGGCTGTATAGCCGGTCCCGAAGAGATGCCGCTGTGTCACTACCGCCTGCAAGGTTACGTTCAGGCGCTGCGTCGCTGCG
GCATTATGGTTGATCCGCAATACATCGCCCGTGGCGACTTCACCTTCGAAGCCGGAAGCAAAGCAATGCAACAGCTGCTT
GATCTTCCACAACCGCCTACTGCTGTCTTCTGCCATAGTGATGTGATGGCGCTCGGCGCACTTTCTCAGGCAAAACGCCA
GGGGCTGAAAGTCCCGGAAGACCTTTCCATAATCGGTTTTGATAACATCGACCTGACGCAATTTTGTGATCCGCCGCTGA
CAACCATCGCGCAGCCGCGTTACGAAATCGGTCGGGAAGCTATGCTGTTATTGCTTGATCAAATGCAGGGGCAACACGTT
GGCAGTGGCTCTCGTTTAATGGACTGCGAACTTATCATCCGGGGATCAACACGCGCGTTACCTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(11-56)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

64.179

98.24

0.63
  cytR Vibrio cholerae C6706

65.443

95.894

0.628