Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8616_RS03600 Genome accession   NZ_AP028382
Coordinates   726442..726990 (-) Length   182 a.a.
NCBI ID   WP_002777084.1    Uniprot ID   A0ABN0ENS3
Organism   Campylobacter coli strain BCH-11051     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 721442..731990
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8616_RS03570 (B11051_07090) ctsT 721484..721789 (-) 306 WP_002790525.1 hypothetical protein Machinery gene
  R8616_RS03575 (B11051_07100) proC 721786..722523 (-) 738 WP_002780246.1 pyrroline-5-carboxylate reductase Machinery gene
  R8616_RS03580 (B11051_07110) fliW 722523..722912 (-) 390 WP_002777093.1 flagellar assembly protein FliW -
  R8616_RS03585 (B11051_07120) - 723076..723723 (+) 648 WP_002777091.1 outer membrane protein assembly factor BamD -
  R8616_RS03590 (B11051_07130) lon 723739..726114 (+) 2376 WP_057044711.1 endopeptidase La -
  R8616_RS03595 (B11051_07140) rpsR 726171..726431 (-) 261 WP_002777087.1 30S ribosomal protein S18 -
  R8616_RS03600 (B11051_07150) ssb 726442..726990 (-) 549 WP_002777084.1 single-stranded DNA-binding protein Machinery gene
  R8616_RS03605 (B11051_07160) rpsF 726999..727376 (-) 378 WP_002777082.1 30S ribosomal protein S6 -
  R8616_RS03610 (B11051_07170) - 727657..728928 (+) 1272 Protein_707 MFS transporter -
  R8616_RS03615 (B11051_07190) - 728925..729929 (+) 1005 WP_196776452.1 sugar phosphate isomerase/epimerase -
  R8616_RS03620 - 730000..730778 (-) 779 Protein_709 DUF535 family protein -
  R8616_RS03625 (B11051_07220) rseP 730775..731878 (-) 1104 WP_002787897.1 RIP metalloprotease RseP -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20733.61 Da        Isoelectric Point: 4.8501

>NTDB_id=94010 R8616_RS03600 WP_002777084.1 726442..726990(-) (ssb) [Campylobacter coli strain BCH-11051]
MFNKVVLVGNLTRDIEMRYGQNGNAIGASAIAVTRRFTTNGERREETCFIDISFYGRTAEVANQYLSKGSKVLIEGRLRF
EQWNDQNGQMRSKHSVQVENMEMLGNNPQQGGNFNNGGNNYGANNNYSNYENQSYDPYMSENNFKKAPQQAQTKTQNPNQ
NQEKIKEIDVDAYDSDDTDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=94010 R8616_RS03600 WP_002777084.1 726442..726990(-) (ssb) [Campylobacter coli strain BCH-11051]
ATGTTTAATAAAGTTGTTTTGGTAGGTAATCTAACACGCGATATAGAAATGCGTTATGGTCAAAATGGAAACGCTATCGG
AGCTTCGGCTATCGCAGTAACAAGAAGGTTTACCACAAATGGAGAAAGACGAGAAGAAACTTGCTTTATCGATATTAGCT
TTTATGGTCGTACTGCTGAAGTAGCAAACCAATATCTCTCTAAGGGTTCTAAAGTCCTTATAGAAGGTCGTTTAAGATTT
GAACAATGGAATGATCAAAATGGACAAATGCGCTCTAAGCACAGCGTTCAAGTTGAAAACATGGAAATGCTAGGAAACAA
TCCTCAACAAGGTGGAAATTTTAACAATGGTGGAAATAATTATGGAGCTAATAATAATTATTCAAATTATGAAAACCAAA
GTTACGATCCTTATATGAGTGAAAATAATTTCAAAAAAGCTCCACAGCAAGCACAAACAAAAACACAAAATCCTAACCAA
AACCAAGAAAAAATTAAAGAAATTGATGTTGATGCTTATGATAGCGATGACACCGATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

37.5

100

0.379

Multiple sequence alignment