Detailed information
Bioinformatically predicted
Overview
| Name | ctsT | Type | Machinery gene |
| Locus tag | R8616_RS03570 | Genome accession | NZ_AP028382 |
| Coordinates | 721484..721789 (-) | Length | 101 a.a. |
| NCBI ID | WP_002790525.1 | Uniprot ID | - |
| Organism | Campylobacter coli strain BCH-11051 | ||
| Function | type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 716484..726789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| R8616_RS03535 (B11051_07020) | - | 716899..717660 (+) | 762 | WP_025431509.1 | ATP-binding protein | - |
| R8616_RS03540 (B11051_07030) | - | 717657..718340 (+) | 684 | WP_002791740.1 | 3-methyladenine DNA glycosylase | - |
| R8616_RS03545 (B11051_07040) | thiD | 718340..719152 (+) | 813 | WP_002786353.1 | bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase | - |
| R8616_RS03550 (B11051_07050) | thiE | 719142..719774 (+) | 633 | WP_002783359.1 | thiamine phosphate synthase | - |
| R8616_RS03555 (B11051_07060) | - | 719752..720381 (+) | 630 | WP_002783358.1 | uroporphyrinogen-III synthase | - |
| R8616_RS03560 (B11051_07070) | - | 720374..720826 (-) | 453 | WP_002777117.1 | hypothetical protein | - |
| R8616_RS03565 (B11051_07080) | - | 720823..721491 (-) | 669 | WP_002790524.1 | hypothetical protein | - |
| R8616_RS03570 (B11051_07090) | ctsT | 721484..721789 (-) | 306 | WP_002790525.1 | hypothetical protein | Machinery gene |
| R8616_RS03575 (B11051_07100) | proC | 721786..722523 (-) | 738 | WP_002780246.1 | pyrroline-5-carboxylate reductase | Machinery gene |
| R8616_RS03580 (B11051_07110) | fliW | 722523..722912 (-) | 390 | WP_002777093.1 | flagellar assembly protein FliW | - |
| R8616_RS03585 (B11051_07120) | - | 723076..723723 (+) | 648 | WP_002777091.1 | outer membrane protein assembly factor BamD | - |
| R8616_RS03590 (B11051_07130) | lon | 723739..726114 (+) | 2376 | WP_057044711.1 | endopeptidase La | - |
| R8616_RS03595 (B11051_07140) | rpsR | 726171..726431 (-) | 261 | WP_002777087.1 | 30S ribosomal protein S18 | - |
Sequence
Protein
Download Length: 101 a.a. Molecular weight: 12410.27 Da Isoelectric Point: 6.0617
>NTDB_id=94008 R8616_RS03570 WP_002790525.1 721484..721789(-) (ctsT) [Campylobacter coli strain BCH-11051]
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
MKVAFSLLELILCIIILGLIFTSISKLFYQLNDNHDYLNYFERLYTLQDKLYTDPHQRDIKLHIQNLKTFDFKENFINDN
IFQFKKLHIQNQDYSLYFYDE
Nucleotide
Download Length: 306 bp
>NTDB_id=94008 R8616_RS03570 WP_002790525.1 721484..721789(-) (ctsT) [Campylobacter coli strain BCH-11051]
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
ATGAAAGTTGCATTCTCGCTTTTAGAATTAATTCTTTGTATAATTATCCTAGGATTAATTTTTACAAGTATTTCTAAATT
ATTTTATCAGCTAAATGACAATCATGATTATTTAAATTATTTTGAAAGATTATACACACTGCAAGATAAACTTTATACCG
ATCCTCATCAAAGAGATATAAAACTTCATATACAGAATTTAAAAACTTTTGATTTTAAAGAAAACTTTATAAATGATAAT
ATCTTTCAATTTAAAAAATTACATATTCAAAATCAAGATTACTCCCTATATTTTTACGATGAATAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ctsT | Campylobacter jejuni subsp. jejuni 81-176 |
48.98 |
97.03 |
0.475 |