Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6667_RS04510 Genome accession   NZ_CP145811
Coordinates   976421..977224 (-) Length   267 a.a.
NCBI ID   WP_338809656.1    Uniprot ID   -
Organism   Neisseria leonii strain CCUG 45853     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 971421..982224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6667_RS04490 (V6667_04490) - 972205..973503 (+) 1299 WP_274584219.1 adenylosuccinate synthase -
  V6667_RS04495 (V6667_04495) - 973955..974746 (-) 792 WP_274584218.1 basic amino acid ABC transporter substrate-binding protein -
  V6667_RS04500 (V6667_04500) - 974819..975067 (-) 249 WP_274571475.1 hypothetical protein -
  V6667_RS04505 (V6667_04505) - 975144..975863 (+) 720 WP_274584217.1 hypothetical protein -
  V6667_RS04510 (V6667_04510) comL 976421..977224 (-) 804 WP_338809656.1 outer membrane protein assembly factor BamD Machinery gene
  V6667_RS04515 (V6667_04515) rluD 977223..978344 (+) 1122 WP_274584215.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6667_RS04520 (V6667_04520) greB 978428..978916 (-) 489 WP_274571479.1 transcription elongation factor GreB -
  V6667_RS04525 (V6667_04525) prfA 978920..979996 (-) 1077 WP_338809657.1 peptide chain release factor 1 -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31018.07 Da        Isoelectric Point: 7.9380

>NTDB_id=940015 V6667_RS04510 WP_338809656.1 976421..977224(-) (comL) [Neisseria leonii strain CCUG 45853]
MKKILLVAALSVILGGCANTGTADKDAQITQDWPVERLYAEAQDELNSNNYTRAIKLYELLESRFPQGRFALQAQLDTAY
AYYKDEEQAKALAAIERFQRLHPQHPSMDYALYLKGLVLFNEDQSFLNRLASQDWSDRDPQANRDAYRAFAELIQRYPDS
RYVPDATERMGKLVDALAGNEISIARYYARRGAYLAAAKRAQNILQNFRNTRFVEESLAIMVFSYQKMGRTQLADDTRRI
LAQNFPQSPFLEKEWSSEIIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=940015 V6667_RS04510 WP_338809656.1 976421..977224(-) (comL) [Neisseria leonii strain CCUG 45853]
ATGAAAAAAATTCTTTTAGTTGCCGCGTTAAGCGTGATTTTGGGCGGTTGCGCCAATACCGGTACAGCCGATAAAGATGC
GCAGATTACCCAAGACTGGCCTGTGGAACGCCTGTACGCCGAAGCGCAAGACGAGCTGAACAGTAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTGGAATCGCGCTTCCCGCAAGGCCGCTTTGCCCTGCAGGCCCAGCTGGATACTGCTTAT
GCGTATTATAAAGACGAAGAACAGGCCAAAGCCTTGGCTGCCATCGAACGCTTCCAGCGTCTGCACCCGCAACACCCGAG
CATGGATTATGCTTTGTATCTCAAAGGCTTGGTATTGTTCAATGAGGATCAGTCTTTCTTAAACCGTCTGGCCTCTCAGG
ACTGGTCCGACCGAGACCCGCAGGCCAACCGCGATGCTTACCGTGCGTTTGCCGAGCTGATCCAGCGTTATCCCGACAGC
AGATACGTTCCCGATGCCACCGAGCGCATGGGTAAACTGGTCGATGCTCTGGCCGGTAACGAAATCTCGATTGCCCGCTA
TTATGCCCGTCGCGGAGCCTATCTGGCAGCAGCCAAACGCGCTCAAAACATCCTGCAGAACTTCCGCAATACCCGTTTTG
TCGAAGAGTCGCTGGCAATTATGGTGTTTTCGTATCAAAAAATGGGACGTACCCAATTGGCTGACGACACCCGCCGTATT
CTGGCGCAAAACTTCCCGCAAAGCCCGTTCTTGGAAAAAGAATGGTCGTCGGAAATCATTCCGTGGTGGCGTTACTGGAA
ATAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

71.805

99.625

0.715
  comL Neisseria meningitidis MC58

71.429

99.625

0.712