Detailed information NTG0939975

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: G6L19_RS04445
• Genome accession: NZ_CP169707
• Coordinates: 900101..901378 (+)
• Length: 425 a.a.
• NCBI ID: WP_003512644.1
• Uniprot ID: A0A1B9V328
• Organism: Agrobacterium tumefaciens strain IL30
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 895101..906378

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
G6L19_RS04425 (G6L19_004425)	-	895708..896076 (+)	369	WP_003512641.1	cupin domain-containing protein	-
G6L19_RS04430 (G6L19_004430)	-	896135..897388 (-)	1254	WP_065704705.1	cytochrome P450	-
G6L19_RS04435 (G6L19_004435)	-	897474..898721 (-)	1248	WP_065704702.1	diguanylate cyclase	-
G6L19_RS04440 (G6L19_004440)	clpP	899177..899809 (+)	633	WP_003496491.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
G6L19_RS04445 (G6L19_004445)	clpX	900101..901378 (+)	1278	WP_003512644.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
G6L19_RS04450 (G6L19_004450)	lon	901791..904208 (+)	2418	WP_003512645.1	endopeptidase La	-
G6L19_RS04455 (G6L19_004455)	hupB	904497..904772 (+)	276	WP_003496481.1	DNA-binding protein HupB	-

Sequence

Protein

• Length: 425 a.a.
• Molecular weight: 46909.83 Da
• Isoelectric Point: 5.0788

>NTDB_id=939975 G6L19_RS04445 WP_003512644.1 900101..901378(+) (clpX) [Agrobacterium tumefaciens strain IL30]
MSKVSGSNGGDSKNTLYCSFCGKSQHEVRKLIAGPTVFICDECVELCMDIIREENKTSMVKSREGVPTPQDIIKILDEYV
IGQKQAKKILSVAVHNHYKRLAHASKNGDVELAKSNIMLVGPTGCGKTYLAQTLARIIDVPFTMADATTLTEAGYVGEDV
ENIILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASVPPQGGRKHPQQEFLQV
DTTNILFICGGAFAGLDKIISARGEKTSIGFGATVKAEDDRRVGEVLRELEPEDLVKFGLIPEFIGRLPVLATLEDLDED
ALIQILSEPKNALVKQYQRLFEMEDVELTFHEDALREIARRAITRKTGARGLRSIMEKILLDTMFELPTLEGVREVVISN
DVVSGIARPLYIYADRQEEKANVSA

Nucleotide

• Length: 1278 bp

>NTDB_id=939975 G6L19_RS04445 WP_003512644.1 900101..901378(+) (clpX) [Agrobacterium tumefaciens strain IL30]
ATGAGCAAAGTCAGCGGCAGCAACGGCGGCGACTCTAAGAATACACTCTATTGTTCATTCTGCGGCAAGAGCCAGCACGA
AGTCCGGAAACTCATTGCCGGACCGACGGTATTCATCTGCGATGAATGCGTCGAATTGTGCATGGACATCATCCGCGAGG
AGAACAAGACGTCGATGGTGAAGTCGCGCGAGGGTGTTCCAACCCCGCAGGACATCATCAAGATCCTCGACGAATACGTC
ATCGGCCAGAAGCAGGCGAAAAAGATCCTGTCGGTGGCCGTTCACAACCATTACAAGCGCCTCGCGCACGCCTCCAAGAA
TGGCGATGTCGAGCTTGCGAAGTCGAACATCATGCTCGTCGGTCCGACGGGTTGCGGCAAGACCTATCTTGCCCAGACGC
TCGCCCGCATCATCGACGTTCCCTTCACGATGGCAGACGCAACGACGCTGACCGAAGCCGGTTATGTCGGCGAGGACGTG
GAAAACATCATCCTGAAGCTGTTGCAGGCTGCGGATTACAATGTTGAGCGCGCCCAGCGCGGCATCGTCTATATCGACGA
AGTCGACAAGATCTCCCGCAAGTCGGATAACCCGTCGATCACGCGTGACGTGTCGGGCGAGGGCGTTCAGCAGGCGCTTC
TGAAGATCATGGAAGGCACGGTCGCTTCCGTTCCGCCGCAGGGCGGCCGCAAGCATCCGCAGCAGGAATTCCTGCAGGTG
GATACGACCAACATCCTGTTCATCTGCGGCGGCGCGTTTGCCGGCCTGGACAAGATCATCTCGGCCAGGGGCGAAAAGAC
CTCGATTGGCTTCGGTGCGACCGTCAAGGCGGAAGACGATCGCCGCGTTGGCGAGGTGCTGCGCGAACTGGAGCCGGAAG
ATCTGGTGAAATTCGGTCTTATTCCGGAATTCATCGGCCGTCTGCCGGTTCTGGCTACGCTGGAGGACCTTGACGAGGAT
GCGCTGATCCAGATCCTGTCCGAGCCGAAGAACGCGCTGGTCAAGCAGTACCAGCGTCTGTTCGAGATGGAAGATGTGGA
ACTGACCTTCCACGAGGACGCGTTGCGCGAGATTGCCCGCCGGGCGATTACCCGCAAGACGGGTGCCCGCGGTCTGCGCT
CGATCATGGAAAAGATCCTTCTGGATACCATGTTCGAACTGCCGACGCTGGAAGGCGTGCGCGAAGTGGTGATCTCCAAC
GATGTCGTCAGCGGCATCGCTCGCCCGCTCTACATCTATGCGGATCGTCAGGAAGAAAAGGCCAATGTTTCGGCTTGA

Domains

Predicted by InterProScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (317-389)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-310)

3D structure

• AlphaFold DB: A0A1B9V328

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.657	93.882	0.588
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.335	94.824	0.525