Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6Z53_RS09775 Genome accession   NZ_CP145732
Coordinates   2149913..2150548 (+) Length   211 a.a.
NCBI ID   WP_338585297.1    Uniprot ID   -
Organism   Pseudomonas sp. MAG733B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2144913..2155548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z53_RS09760 (V6Z53_09760) - 2145271..2146050 (+) 780 WP_338585293.1 ABC transporter permease -
  V6Z53_RS09765 (V6Z53_09765) - 2146928..2147443 (-) 516 WP_338585294.1 DUF2062 domain-containing protein -
  V6Z53_RS09770 (V6Z53_09770) comA 2147580..2149808 (+) 2229 WP_338585296.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6Z53_RS09775 (V6Z53_09775) exbB 2149913..2150548 (+) 636 WP_338585297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6Z53_RS09780 (V6Z53_09780) - 2150545..2150973 (+) 429 WP_338585298.1 biopolymer transporter ExbD -
  V6Z53_RS09785 (V6Z53_09785) lpxK 2150973..2151983 (+) 1011 WP_338585299.1 tetraacyldisaccharide 4'-kinase -
  V6Z53_RS09790 (V6Z53_09790) - 2152009..2152194 (+) 186 WP_007945752.1 Trm112 family protein -
  V6Z53_RS09795 (V6Z53_09795) kdsB 2152191..2152955 (+) 765 WP_338585300.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6Z53_RS09800 (V6Z53_09800) - 2152955..2153419 (+) 465 WP_338585301.1 low molecular weight protein-tyrosine-phosphatase -
  V6Z53_RS09805 (V6Z53_09805) murB 2153416..2154435 (+) 1020 WP_338585302.1 UDP-N-acetylmuramate dehydrogenase -
  V6Z53_RS09810 (V6Z53_09810) - 2154675..2155145 (+) 471 WP_338585304.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22943.08 Da        Isoelectric Point: 7.3615

>NTDB_id=939859 V6Z53_RS09775 WP_338585297.1 2149913..2150548(+) (exbB) [Pseudomonas sp. MAG733B]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKKLNKDRLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYINALGTIAAMAPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLTEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=939859 V6Z53_RS09775 WP_338585297.1 2149913..2150548(+) (exbB) [Pseudomonas sp. MAG733B]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGCGGCCATGGCAATCGTTGC
CGAGCGTCTGTGGACCCTGCGAGCCAGTCGCGTGACCCCGGAGCACCTGCTCGGGCAGGTCTGGGTCTGGATCAAAGACA
AGAAGCTCAACAAAGACAGGCTCAAGGAACTGCGCGCCAACTCGCCTCTGGGTGAAATCCTCGCCGCCGGCCTTGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCTGCGGCGCGGGTCATCCACGATCTGGAGCGTTACAT
CAACGCCCTCGGCACCATTGCCGCCATGGCGCCGTTACTGGGCCTGCTCGGTACCGTGCTGGGCATGATCGATATTTTCA
GCGCATTCACCGGCAGTGGCATGACCACCAACGCTTCGGTGCTGGCCGGTGGTATTTCCAAGGCCCTGATCACCACGGCT
GCCGGTTTGATGGTCGGTATCCCGGCGGTATTCTTCCATCGATTCCTGCAACGCCGGATCGATGAGCTGGTGGTCGGGAT
GGAACAGGAAGCGATCAAACTGGTCGAGGTAGTGCAGGGCGACCGCGACGTGGACCTGACCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.308

100

0.853