Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6Z53_RS09770 Genome accession   NZ_CP145732
Coordinates   2147580..2149808 (+) Length   742 a.a.
NCBI ID   WP_338585296.1    Uniprot ID   -
Organism   Pseudomonas sp. MAG733B     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2142580..2154808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z53_RS09745 (V6Z53_09745) - 2142883..2143542 (+) 660 WP_338585290.1 transglutaminase family protein -
  V6Z53_RS09750 (V6Z53_09750) - 2143586..2144209 (+) 624 WP_338585291.1 glutathione S-transferase -
  V6Z53_RS09755 (V6Z53_09755) - 2144342..2145274 (+) 933 WP_338585292.1 ABC transporter ATP-binding protein -
  V6Z53_RS09760 (V6Z53_09760) - 2145271..2146050 (+) 780 WP_338585293.1 ABC transporter permease -
  V6Z53_RS09765 (V6Z53_09765) - 2146928..2147443 (-) 516 WP_338585294.1 DUF2062 domain-containing protein -
  V6Z53_RS09770 (V6Z53_09770) comA 2147580..2149808 (+) 2229 WP_338585296.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6Z53_RS09775 (V6Z53_09775) exbB 2149913..2150548 (+) 636 WP_338585297.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6Z53_RS09780 (V6Z53_09780) - 2150545..2150973 (+) 429 WP_338585298.1 biopolymer transporter ExbD -
  V6Z53_RS09785 (V6Z53_09785) lpxK 2150973..2151983 (+) 1011 WP_338585299.1 tetraacyldisaccharide 4'-kinase -
  V6Z53_RS09790 (V6Z53_09790) - 2152009..2152194 (+) 186 WP_007945752.1 Trm112 family protein -
  V6Z53_RS09795 (V6Z53_09795) kdsB 2152191..2152955 (+) 765 WP_338585300.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6Z53_RS09800 (V6Z53_09800) - 2152955..2153419 (+) 465 WP_338585301.1 low molecular weight protein-tyrosine-phosphatase -
  V6Z53_RS09805 (V6Z53_09805) murB 2153416..2154435 (+) 1020 WP_338585302.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 81467.65 Da        Isoelectric Point: 9.7331

>NTDB_id=939858 V6Z53_RS09770 WP_338585296.1 2147580..2149808(+) (comA) [Pseudomonas sp. MAG733B]
MCTGMMALALGLLALRFLPALPPVGLLLLMPVVGLMLLPFRTYPVAFFLFGLSWACAQAHWALDDRLSPSLDGETRWVEG
RVVGLPQNSEGVVRFELADARSRHAKVPKLMRVAWYDGPPVNSGERWRLAVKLKRPAGLLNPHAFDYDAWLLAQRIGATG
TVKDGERLAQARWAWRDGIRQRLQAVDAQGRTGALAALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARYGLWPSRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLVLLWRLRFRHLGAWWPLLLALNGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIALGLGPLLLVLGLPVSVSGPLVNLLAVPWISLVVLPPAL
LGTVMLPVPYMGEGLLWLAGGLIDGLFKGLALVAGQIPAWVPMAIPFWVWCLGALGAFLLLLPRGVPMRALGWPMLLLLI
FSPRPELPEGIADVWQLDVGQGLAILVRTRHHTLLYDTGPRFGDFDLGERVVLPSLLKLGVKELDLMLISHADADHSGGA
RAVANGLPVKRVISGDPEALPAELQAQACETDRQWTWDGVQFRLWQWSSASDSNQKSYVLQIEANGERLLLTGDIDTNAE
RALLESPLAVPTDWLQAPHHGSRSSSSMALLNGLQPKAVLISRGQGNSFGHPHPTVMARYRKRAMAIYDSAEQGAIHLQL
GRFESPRSMRQERRFWRDPPPL

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=939858 V6Z53_RS09770 WP_338585296.1 2147580..2149808(+) (comA) [Pseudomonas sp. MAG733B]
ATGTGCACAGGGATGATGGCGCTGGCACTGGGATTGCTGGCCCTGCGTTTTTTACCGGCATTGCCGCCGGTCGGGTTGTT
GCTGTTGATGCCGGTGGTCGGTTTGATGTTGCTGCCGTTCAGGACGTACCCCGTGGCGTTCTTCCTGTTCGGTTTGAGTT
GGGCTTGCGCGCAGGCGCATTGGGCGCTGGACGATCGACTGTCGCCGAGCCTCGATGGCGAAACCCGCTGGGTCGAAGGG
CGGGTAGTGGGTTTGCCCCAGAACAGCGAAGGCGTCGTACGTTTCGAATTGGCAGACGCCCGCTCGCGACATGCAAAAGT
GCCGAAACTCATGCGCGTGGCCTGGTATGACGGCCCGCCGGTGAACAGCGGCGAGCGCTGGCGACTGGCGGTCAAGTTGA
AGCGTCCTGCCGGTTTACTCAATCCGCACGCTTTCGATTACGACGCCTGGCTGCTGGCGCAACGCATCGGTGCGACCGGT
ACGGTCAAGGACGGCGAGCGACTGGCGCAAGCGCGATGGGCCTGGCGCGACGGTATCCGCCAGAGGCTTCAAGCGGTAGA
CGCCCAGGGACGAACCGGTGCGCTGGCGGCTTTGGTGCTGGGCGATGGCGCCGGGCTGAGCCGCGAAGACTGGCAGGTAT
TGCAGGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGACAACACATCGGTTTGCTGGCGGGCGTGGTGTATCTGTTG
ATCGCCGGTCTTGCCCGTTATGGCCTGTGGCCCAGCCGTCTGCCATGGCTGCCCTGGGCCTGTGGCCTGGCATTCGCGGC
CGCTCTCGGTTACGGATTGCTGGCCGGTTTTGAGGTGCCGGTGCGTCGGGCCTGTTTGATGATCGGGCTGGTGCTGTTAT
GGCGCCTGCGGTTTCGTCATCTTGGCGCTTGGTGGCCGCTATTGCTGGCACTCAATGGCGTTTTGCTGCTTGATCCGCTG
GCGAGTCTTCAGCCGGGGTTCTGGTTGTCCTTCGCGGCGGTGGCGGTGCTGATTTTTACTTTCGGCGGCCGGTTGGGCCC
TTGGCGCTGGTGGCAGACCTGGACCCGTGCGCAATGGTTGATCGCATTGGGATTGGGCCCGTTATTACTGGTGCTGGGAT
TGCCGGTCAGCGTCAGTGGGCCATTGGTCAACTTGCTGGCGGTGCCCTGGATCAGCCTGGTGGTGCTGCCTCCCGCATTG
CTCGGCACGGTGATGTTGCCGGTGCCTTACATGGGCGAAGGCTTGCTGTGGCTGGCGGGTGGTTTGATCGATGGATTGTT
CAAGGGACTGGCGTTGGTCGCTGGTCAGATTCCTGCGTGGGTACCCATGGCGATTCCGTTTTGGGTCTGGTGCCTGGGCG
CGTTGGGGGCCTTTCTGTTGCTTCTACCCCGAGGCGTGCCAATGCGTGCGTTGGGGTGGCCCATGCTGCTGTTGCTGATT
TTTTCGCCGCGCCCCGAGTTACCGGAAGGCATCGCCGATGTCTGGCAACTGGATGTCGGACAGGGACTGGCGATTTTGGT
GCGCACCCGGCATCACACACTGCTGTATGACACCGGCCCGCGTTTCGGCGATTTCGACCTGGGAGAGCGAGTCGTATTGC
CGTCATTACTCAAACTGGGCGTGAAAGAACTCGATCTGATGCTGATCAGCCACGCCGACGCCGACCACTCCGGTGGCGCC
CGCGCGGTTGCCAACGGGCTGCCGGTCAAGCGTGTGATCAGTGGCGACCCAGAGGCGCTGCCTGCCGAGTTGCAAGCCCA
AGCCTGTGAAACCGACCGGCAATGGACCTGGGACGGTGTTCAGTTCCGGCTCTGGCAATGGTCATCAGCCAGTGACAGCA
ATCAGAAGTCCTACGTTTTGCAGATTGAAGCCAACGGTGAGCGATTGTTGCTGACCGGCGACATCGACACCAACGCCGAG
CGCGCACTGCTCGAAAGCCCATTGGCCGTGCCGACCGACTGGTTGCAGGCGCCGCACCATGGCAGTCGCAGTTCATCTTC
GATGGCGCTGCTCAACGGCTTGCAGCCCAAAGCGGTGCTGATCTCCCGTGGTCAGGGCAATTCGTTCGGTCATCCTCATC
CGACGGTCATGGCGCGCTATCGAAAACGCGCAATGGCAATCTATGACAGCGCCGAACAGGGTGCCATTCATCTGCAACTC
GGACGTTTCGAATCACCGCGCTCGATGCGTCAGGAACGGCGGTTCTGGCGCGATCCGCCGCCCTTGTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-672)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.726

96.9

0.608