Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6W80_RS18075 Genome accession   NZ_CP145723
Coordinates   3786681..3787316 (-) Length   211 a.a.
NCBI ID   WP_017639767.1    Uniprot ID   -
Organism   Pseudomonas benzopyrenica strain MLY92     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3781681..3792316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6W80_RS18040 (V6W80_18040) petA 3782218..3782796 (-) 579 WP_184285854.1 ubiquinol-cytochrome c reductase iron-sulfur subunit -
  V6W80_RS18045 (V6W80_18045) murB 3782793..3783815 (-) 1023 WP_338545005.1 UDP-N-acetylmuramate dehydrogenase -
  V6W80_RS18050 (V6W80_18050) - 3783805..3784272 (-) 468 WP_338547467.1 low molecular weight protein-tyrosine-phosphatase -
  V6W80_RS18055 (V6W80_18055) kdsB 3784279..3785043 (-) 765 WP_338545006.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6W80_RS18060 (V6W80_18060) - 3785040..3785225 (-) 186 WP_007162406.1 Trm112 family protein -
  V6W80_RS18065 (V6W80_18065) lpxK 3785240..3786247 (-) 1008 WP_338545007.1 tetraacyldisaccharide 4'-kinase -
  V6W80_RS18070 (V6W80_18070) - 3786244..3786684 (-) 441 WP_017639766.1 biopolymer transporter ExbD -
  V6W80_RS18075 (V6W80_18075) exbB 3786681..3787316 (-) 636 WP_017639767.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6W80_RS18080 (V6W80_18080) comA 3787365..3789605 (-) 2241 WP_257705475.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6W80_RS18085 (V6W80_18085) - 3789711..3790952 (-) 1242 WP_257705474.1 lipoprotein-releasing ABC transporter permease subunit -
  V6W80_RS18090 (V6W80_18090) lolD 3790960..3791661 (-) 702 WP_257705473.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23064.13 Da        Isoelectric Point: 6.8860

>NTDB_id=939740 V6W80_RS18075 WP_017639767.1 3786681..3787316(-) (exbB) [Pseudomonas benzopyrenica strain MLY92]
MFEMVKAGGWMMLPIILSSILATAIIAERLWTLRRGRVAPPTLLAQVWRWIQDKQLNNERLRELRAGSPLGDILAAGLTN
SRHGRDIMKEAIEEAGSRVVHDLERYLNTLGSIAALAPLMGLLGTVFGMIDIFSAFMNDGMANAPILAGGISKALVTTAA
GLLVAIPAVFFHRYLLRRVDELVVGMEQEAVKLVDILHGDREVDVREGALA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=939740 V6W80_RS18075 WP_017639767.1 3786681..3787316(-) (exbB) [Pseudomonas benzopyrenica strain MLY92]
GTGTTCGAAATGGTCAAAGCTGGCGGCTGGATGATGCTGCCGATCATCCTCAGTTCCATTCTGGCCACGGCCATCATCGC
CGAGCGGCTGTGGACCCTGAGGCGCGGCCGGGTCGCCCCGCCCACGCTGCTCGCCCAGGTCTGGCGCTGGATCCAGGACA
AACAGCTCAACAATGAACGCCTGCGCGAGTTGCGCGCCGGTTCGCCCCTGGGCGACATCCTCGCCGCAGGCCTGACCAAT
TCCCGTCATGGTCGCGACATCATGAAGGAAGCCATCGAGGAAGCCGGCAGCCGCGTGGTGCACGACCTCGAGCGCTATCT
CAACACCCTCGGCAGCATCGCCGCCCTGGCGCCGCTGATGGGTCTGCTCGGCACGGTGTTCGGCATGATCGATATCTTCA
GTGCCTTCATGAACGACGGCATGGCCAATGCGCCCATTCTCGCCGGCGGCATCTCCAAGGCCCTGGTCACCACCGCCGCC
GGTCTGCTGGTGGCGATTCCCGCGGTGTTCTTTCATCGCTATCTGCTGCGTCGGGTGGACGAGCTGGTGGTGGGCATGGA
GCAGGAAGCGGTCAAGCTGGTGGACATCCTCCACGGTGATCGCGAGGTGGACGTCCGCGAAGGAGCCCTGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(68-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

75.481

98.578

0.744