Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   V6W80_RS03395 Genome accession   NZ_CP145723
Coordinates   717235..717642 (+) Length   135 a.a.
NCBI ID   WP_007161679.1    Uniprot ID   A0AAX3KW86
Organism   Pseudomonas benzopyrenica strain MLY92     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 712235..722642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6W80_RS03365 (V6W80_03365) - 712482..713480 (-) 999 WP_017640980.1 aspartate carbamoyltransferase catalytic subunit -
  V6W80_RS03370 (V6W80_03370) pyrR 713496..714005 (-) 510 WP_338545839.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  V6W80_RS03375 (V6W80_03375) ruvX 714008..714460 (-) 453 WP_338545840.1 Holliday junction resolvase RuvX -
  V6W80_RS03380 (V6W80_03380) - 714457..715026 (-) 570 WP_231356925.1 YqgE/AlgH family protein -
  V6W80_RS03385 (V6W80_03385) - 715082..715960 (-) 879 WP_338545841.1 TonB family protein -
  V6W80_RS03390 (V6W80_03390) gshB 716064..717014 (-) 951 WP_338545842.1 glutathione synthase -
  V6W80_RS03395 (V6W80_03395) pilG 717235..717642 (+) 408 WP_007161679.1 twitching motility response regulator PilG Regulator
  V6W80_RS03400 (V6W80_03400) pilH 717683..718048 (+) 366 WP_007161680.1 twitching motility response regulator PilH -
  V6W80_RS03405 (V6W80_03405) - 718098..718634 (+) 537 WP_017640975.1 chemotaxis protein CheW -
  V6W80_RS03410 (V6W80_03410) - 718796..720826 (+) 2031 WP_017640974.1 methyl-accepting chemotaxis protein -
  V6W80_RS03415 (V6W80_03415) - 720888..721736 (+) 849 WP_082731539.1 CheR family methyltransferase -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14917.33 Da        Isoelectric Point: 7.2433

>NTDB_id=939728 V6W80_RS03395 WP_007161679.1 717235..717642(+) (pilG) [Pseudomonas benzopyrenica strain MLY92]
MEQYSEGLKVMVIDDSKTIRRTAETLLKKVGCEVITAIDGFDALAKIADSHPHIIFVDIMMPRLDGYQTCALIKNNSAFR
ATPVIMLSSRDGLFDKAKGRIVGSDQYLTKPFSKEELIGAIKTHVPSFTPLEQAS

Nucleotide


Download         Length: 408 bp        

>NTDB_id=939728 V6W80_RS03395 WP_007161679.1 717235..717642(+) (pilG) [Pseudomonas benzopyrenica strain MLY92]
ATGGAACAGTATTCGGAAGGGCTGAAGGTCATGGTGATCGACGACTCGAAGACGATTCGTCGGACCGCCGAGACCCTGCT
CAAGAAAGTTGGCTGCGAGGTCATCACCGCCATCGATGGATTCGATGCGCTCGCCAAGATCGCCGATAGTCATCCCCACA
TCATCTTCGTGGACATCATGATGCCGCGACTGGATGGCTATCAGACCTGCGCGCTGATCAAGAACAACAGCGCCTTCCGC
GCGACGCCCGTCATCATGCTGTCTTCGCGTGATGGCCTCTTCGACAAGGCCAAGGGCCGCATCGTCGGCTCTGACCAGTA
CCTCACCAAACCCTTCAGCAAAGAAGAGCTGATCGGTGCGATCAAGACCCACGTCCCCAGTTTCACTCCGCTCGAACAAG
CGTCCTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

74.016

94.074

0.696
  vicR Streptococcus mutans UA159

39.683

93.333

0.37