Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | V6D45_RS00575 | Genome accession | NZ_CP145722 |
| Coordinates | 103240..105672 (+) | Length | 810 a.a. |
| NCBI ID | WP_003225731.1 | Uniprot ID | G4NQC0 |
| Organism | Bacillus spizizenii strain kcgeb_S11 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 98240..110672
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| V6D45_RS00560 (V6D45_00560) | ctsR | 101117..101581 (+) | 465 | WP_003225724.1 | transcriptional regulator CtsR | - |
| V6D45_RS00565 (V6D45_00565) | mcsA | 101595..102152 (+) | 558 | WP_338443620.1 | protein-arginine kinase activator protein McsA | - |
| V6D45_RS00570 (V6D45_00570) | - | 102152..103243 (+) | 1092 | WP_061188087.1 | protein arginine kinase | - |
| V6D45_RS00575 (V6D45_00575) | clpC | 103240..105672 (+) | 2433 | WP_003225731.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| V6D45_RS00580 (V6D45_00580) | radA | 105764..107140 (+) | 1377 | WP_014112330.1 | DNA repair protein RadA | Machinery gene |
| V6D45_RS00585 (V6D45_00585) | disA | 107144..108226 (+) | 1083 | WP_014112331.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| V6D45_RS00590 (V6D45_00590) | - | 108341..109441 (+) | 1101 | WP_014112332.1 | PIN/TRAM domain-containing protein | - |
| V6D45_RS00595 (V6D45_00595) | ispD | 109455..110153 (+) | 699 | WP_338443623.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| V6D45_RS00600 (V6D45_00600) | ispF | 110146..110622 (+) | 477 | WP_072182890.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 810 a.a. Molecular weight: 90063.57 Da Isoelectric Point: 6.1203
>NTDB_id=939643 V6D45_RS00575 WP_003225731.1 103240..105672(+) (clpC) [Bacillus spizizenii strain kcgeb_S11]
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSDKIQKEVESLIGRGQEMSQTIHY
TPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGSSATGTNSNANT
PTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVM
TLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDEY
RKYIEKDAALERRFQPIQVDQPSADESIQILKGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS
KVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDDIAMVV
SSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAE
SIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRLT
DSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDETQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLT
EIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIHKGQHIVLDVEDGE
FVVKTTAKTN
Nucleotide
Download Length: 2433 bp
>NTDB_id=939643 V6D45_RS00575 WP_003225731.1 103240..105672(+) (clpC) [Bacillus spizizenii strain kcgeb_S11]
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTCCGTTTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGTGAAGGGATTGCTGCTAAAGCTCTACAAGCGCTTG
GGCTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGGCAGGAAATGTCTCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGGCATTCTTATGTCGGGACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGTGAAGGTGTTGCTGCGAGAGTGCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAGGTGCTACAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGATCCTGTAATCGGCAGAAGCAA
GGAAATTCAGCGTGTGATAGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTTCTCATTGGTGAACCAGGTGTAGGTA
AAACGGCTATCGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCCGAAATCTTGCGCGATAAACGCGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACAAAATACCGCGGTGAATTTGAGGATCGCCTGAAAAAGGTCATGGATGA
GATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTTCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGACGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGTGAACTTCAATGTATTGGAGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATACAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTACGTGACCGATATGAAGCTCACCACCGAGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTCCCGGATAAAGCAATTGACTTAATTGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCTCCTAACTTAAAGGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCTTCA
CTCCCGTGTCATTGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTTAGACGTGCAAGAGCAGGATTAAAAGATC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTTGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGTGATGAGGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTCTTCAATATCCTCCTGCAAGTTCTTGAAGACGGACGATTGACT
GATTCTAAGGGACGTACAGTCGATTTCCGTAATACCATTCTGATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGCGAATTGA
AACGTGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATTGTCTTCCATTCACTTGAGAAAAAACATCTCACT
GAAATTGTATCATTGATGTCTGATCAATTAACGAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACCGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGACTTGGAGTACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTCCGAGGAAATATTCATAAAGGACAGCATATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
ATGATGTTTGGAAGATTTACAGAACGAGCTCAAAAAGTACTGGCGCTTGCACAGGAAGAAGCACTCCGTTTAGGTCATAA
TAACATTGGCACTGAGCATATTTTATTAGGACTGGTACGAGAAGGTGAAGGGATTGCTGCTAAAGCTCTACAAGCGCTTG
GGCTTGGTTCAGATAAAATTCAAAAAGAAGTTGAAAGTTTGATCGGTCGCGGGCAGGAAATGTCTCAAACGATTCATTAC
ACTCCTAGAGCTAAGAAAGTCATTGAGCTTTCAATGGATGAGGCAAGAAAACTCGGGCATTCTTATGTCGGGACAGAACA
TATTCTTCTTGGTCTGATTCGCGAAGGTGAAGGTGTTGCTGCGAGAGTGCTGAATAACCTCGGTGTCAGCTTAAATAAAG
CAAGACAGCAGGTGCTACAGCTTCTTGGAAGCAATGAAACAGGATCATCAGCGACAGGAACAAACAGCAATGCGAATACG
CCTACGCTTGACAGCTTGGCAAGAGACTTAACTGCTATTGCGAAGGAAGACAGCCTTGATCCTGTAATCGGCAGAAGCAA
GGAAATTCAGCGTGTGATAGAAGTGTTAAGCCGCAGAACGAAAAACAACCCTGTTCTCATTGGTGAACCAGGTGTAGGTA
AAACGGCTATCGCAGAAGGTTTGGCACAGCAAATTATCAATAACGAAGTTCCCGAAATCTTGCGCGATAAACGCGTGATG
ACATTAGACATGGGAACAGTTGTTGCCGGCACAAAATACCGCGGTGAATTTGAGGATCGCCTGAAAAAGGTCATGGATGA
GATTCGCCAGGCAGGAAACATCATTCTATTCATCGATGAGCTTCATACATTAATCGGAGCGGGCGGAGCAGAAGGTGCCA
TTGACGCATCTAACATTTTAAAACCTTCACTTGCTCGCGGTGAACTTCAATGTATTGGAGCGACGACTCTTGATGAGTAC
CGTAAATATATTGAAAAAGATGCAGCGTTGGAACGCCGTTTTCAGCCGATACAGGTTGATCAGCCGTCTGCAGATGAAAG
TATTCAAATTTTAAAAGGCTTACGTGACCGATATGAAGCTCACCACCGAGTATCAATTACAGATGATGCCATTGAAGCTG
CGGTTAAGCTTTCTGACAGATATATTTCTGACCGTTTCCTCCCGGATAAAGCAATTGACTTAATTGATGAAGCGGGTTCA
AAGGTGAGACTGCGCTCCTTTACAACGCCTCCTAACTTAAAGGAGCTTGAACAGAAGCTTGATGAGGTTCGTAAAGAGAA
GGATGCGGCAGTGCAAAGCCAAGAGTTTGAAAAAGCAGCTTCCTTGCGTGATACTGAGCAGCGCCTGCGCGAGCAAGTAG
AGGATACGAAGAAATCATGGAAAGAGAAGCAAGGGCAGGAAAACTCAGAGGTTACTGTTGATGATATTGCGATGGTTGTA
TCCAGCTGGACTGGGGTGCCTGTATCTAAAATCGCCCAAACTGAAACAGATAAGCTTCTCAATATGGAAAGCATTCTTCA
CTCCCGTGTCATTGGCCAGGATGAAGCAGTTGTAGCTGTTGCAAAAGCAGTTAGACGTGCAAGAGCAGGATTAAAAGATC
CTAAACGCCCAATCGGCTCATTCATTTTCTTAGGCCCTACAGGTGTTGGTAAAACAGAGCTTGCGCGAGCACTTGCTGAA
TCCATTTTCGGTGATGAGGAAGCCATGATCAGAATTGATATGTCTGAATACATGGAAAAACACTCAACTTCAAGACTTGT
CGGTTCACCTCCGGGATATGTGGGATACGATGAAGGCGGCCAATTAACAGAGAAAGTCAGAAGAAAACCTTACTCTGTCG
TGCTTCTTGATGAGATTGAGAAAGCGCACCCTGATGTCTTCAATATCCTCCTGCAAGTTCTTGAAGACGGACGATTGACT
GATTCTAAGGGACGTACAGTCGATTTCCGTAATACCATTCTGATTATGACGTCAAACGTCGGAGCAAGTGAGCTGAAACG
CAATAAATATGTCGGCTTTAACGTTCAGGATGAGACGCAAAATCATAAAGACATGAAAGATAAAGTGATGGGCGAATTGA
AACGTGCGTTCAGACCGGAGTTTATCAACCGGATTGATGAAATCATTGTCTTCCATTCACTTGAGAAAAAACATCTCACT
GAAATTGTATCATTGATGTCTGATCAATTAACGAAACGCCTGAAAGAACAGGATCTTTCTATCGAATTGACCGATGCTGC
AAAAGCGAAAGTCGCGGAAGAGGGCGTTGACTTGGAGTACGGTGCCCGTCCGTTAAGAAGAGCTATCCAAAAACATGTCG
AGGACCGTTTATCTGAAGAACTCCTCCGAGGAAATATTCATAAAGGACAGCATATCGTTCTCGATGTAGAAGACGGCGAA
TTTGTCGTAAAAACGACTGCTAAAACGAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
99.259 |
100 |
0.993 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
50.374 |
99.012 |
0.499 |
| clpC | Streptococcus thermophilus LMD-9 |
46.602 |
100 |
0.474 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.359 |
100 |
0.472 |
| clpC | Streptococcus pneumoniae Rx1 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae D39 |
45.241 |
99.877 |
0.452 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.117 |
99.877 |
0.451 |
| clpC | Streptococcus mutans UA159 |
43.462 |
100 |
0.443 |
| clpE | Streptococcus mutans UA159 |
53.159 |
80.123 |
0.426 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
48.523 |
87.778 |
0.426 |
| clpE | Streptococcus pneumoniae TIGR4 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae Rx1 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae D39 |
53.612 |
76.914 |
0.412 |
| clpE | Streptococcus pneumoniae R6 |
53.612 |
76.914 |
0.412 |