Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R8634_RS05625 Genome accession   NZ_AP028381
Coordinates   1078065..1078613 (+) Length   182 a.a.
NCBI ID   WP_002860190.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-11000     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1073065..1083613
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8634_RS05590 (B11000_10980) - 1073255..1073680 (+) 426 WP_002777060.1 GNAT family N-acetyltransferase -
  R8634_RS05595 (B11000_10990) - 1073744..1074364 (+) 621 WP_317655882.1 NAD(P)H-dependent oxidoreductase -
  R8634_RS05600 (B11000_11000) - 1074364..1074969 (+) 606 WP_002853752.1 NAD(P)H-dependent oxidoreductase -
  R8634_RS05605 (B11000_11010) pgsA 1075094..1075630 (+) 537 WP_002812871.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R8634_RS05610 (B11000_11020) rseP 1075627..1076733 (+) 1107 WP_317655884.1 RIP metalloprotease RseP -
  R8634_RS05615 (B11000_11030) - 1076726..1077592 (+) 867 WP_002868637.1 VirK family antimicrobial peptide resistance protein -
  R8634_RS05620 (B11000_11040) rpsF 1077679..1078056 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R8634_RS05625 (B11000_11050) ssb 1078065..1078613 (+) 549 WP_002860190.1 single-stranded DNA-binding protein Machinery gene
  R8634_RS05630 (B11000_11060) rpsR 1078624..1078884 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R8634_RS05635 (B11000_11070) lon 1078944..1081319 (-) 2376 WP_002852988.1 endopeptidase La -
  R8634_RS05640 (B11000_11080) - 1081336..1081983 (-) 648 WP_002860191.1 outer membrane protein assembly factor BamD -
  R8634_RS05645 (B11000_11090) fliW 1082144..1082533 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R8634_RS05650 (B11000_11100) proC 1082533..1083264 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  R8634_RS05655 (B11000_11110) ctsT 1083261..1083563 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20596.50 Da        Isoelectric Point: 5.0431

>NTDB_id=93954 R8634_RS05625 WP_002860190.1 1078065..1078613(+) (ssb) [Campylobacter jejuni strain BCH-11000]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNPQ
HEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=93954 R8634_RS05625 WP_002860190.1 1078065..1078613(+) (ssb) [Campylobacter jejuni strain BCH-11000]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGGTTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGTTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAAGCT
ATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCACAA
CACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.172

100

0.39
  ssb Vibrio cholerae strain A1552

37.5

96.703

0.363

Multiple sequence alignment