Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   ORY85_RS07595 Genome accession   NZ_CP145606
Coordinates   1592931..1594166 (-) Length   411 a.a.
NCBI ID   WP_274572472.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1587931..1599166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS07565 (ORY85_07565) pxpB 1588034..1588702 (-) 669 WP_274572467.1 5-oxoprolinase subunit PxpB -
  ORY85_RS07570 (ORY85_07570) - 1588844..1589185 (-) 342 WP_274572468.1 helix-turn-helix domain-containing protein -
  ORY85_RS07575 (ORY85_07575) - 1589346..1590005 (+) 660 WP_274572469.1 NAD(P)-dependent oxidoreductase -
  ORY85_RS10590 - 1590261..1590584 (-) 324 WP_367575888.1 gamma-glutamyltransferase -
  ORY85_RS07580 (ORY85_07580) - 1590466..1590816 (-) 351 Protein_1470 gamma-glutamyltransferase -
  ORY85_RS07585 (ORY85_07585) - 1591047..1591751 (-) 705 WP_338577913.1 fumarylacetoacetate hydrolase family protein -
  ORY85_RS07590 (ORY85_07590) - 1591848..1592585 (-) 738 WP_274572471.1 dienelactone hydrolase family protein -
  ORY85_RS07595 (ORY85_07595) pilA 1592931..1594166 (-) 1236 WP_274572472.1 signal recognition particle-docking protein FtsY Machinery gene
  ORY85_RS07600 (ORY85_07600) - 1594289..1594975 (-) 687 WP_274572473.1 2,3-diphosphoglycerate-dependent phosphoglycerate mutase -
  ORY85_RS07610 (ORY85_07610) cyaY 1595498..1595827 (-) 330 WP_274572474.1 iron donor protein CyaY -
  ORY85_RS07615 (ORY85_07615) - 1595893..1596090 (+) 198 WP_274572475.1 LPS translocon maturation chaperone LptM -
  ORY85_RS07620 (ORY85_07620) lysA 1596087..1597310 (+) 1224 WP_274572476.1 diaminopimelate decarboxylase -
  ORY85_RS07625 (ORY85_07625) - 1597682..1598275 (-) 594 WP_274572532.1 outer membrane lipoprotein carrier protein LolA -
  ORY85_RS07630 (ORY85_07630) - 1598311..1598748 (-) 438 WP_274572477.1 thioesterase family protein -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 43877.79 Da        Isoelectric Point: 4.8748

>NTDB_id=939013 ORY85_RS07595 WP_274572472.1 1592931..1594166(-) (pilA) [Neisseria leonii strain 3986]
MFGLFKRRPQPEEETAQTAQRPSETNPLLMPQETGEEPQYLSEIVQPSAEGGAEAESTPPPAENAAGTAVPHGETAAVQA
ERPIAPPAYHGHTAENPVSAGQPAEAEKTGWAARLKQGLSKSRNQMAKSLAGVFGGGKIDEALYEELETVLLTGDMGIEA
TERLMDEVRRRVSLKGLRDSTELRQALKDALYDLLEPLQSPLRLPDDGRPFVIMMAGINGAGKTTSIGKLAKYFQQQGKS
VVLAAGDTFRAAAREQLQEWGRRNGVTVISQAKGDSAAVCFDAVEAAKARGIDVVLADTAGRLPTQLHLMEEIKKVKRVL
QKTMPDAPHEIMVVLDANIGQNAVNQVIAFDDALGVTGLIVTKLDGTAKGGVLAALASARPIPVHYIGVGEGIDDLRPFD
ARAFVDALIED

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=939013 ORY85_RS07595 WP_274572472.1 1592931..1594166(-) (pilA) [Neisseria leonii strain 3986]
ATGTTCGGATTGTTCAAACGCCGCCCGCAACCGGAGGAAGAGACCGCCCAAACGGCGCAGAGGCCGTCTGAAACCAACCC
CCTCTTGATGCCGCAGGAAACCGGGGAAGAGCCGCAATATTTGAGCGAGATTGTCCAACCTTCGGCGGAGGGCGGGGCAG
AGGCGGAAAGTACGCCGCCTCCTGCCGAAAATGCAGCCGGTACAGCCGTGCCGCACGGAGAGACGGCTGCCGTTCAGGCA
GAAAGGCCGATTGCGCCGCCGGCGTACCATGGCCATACGGCGGAAAATCCGGTATCGGCCGGACAGCCTGCCGAAGCGGA
AAAAACCGGGTGGGCGGCGCGCCTGAAACAGGGATTGAGCAAATCGCGCAACCAGATGGCCAAATCGCTGGCCGGTGTGT
TCGGCGGCGGCAAAATCGACGAAGCCCTATATGAAGAGCTGGAAACCGTCCTGCTCACCGGCGACATGGGCATCGAAGCG
ACCGAACGGCTGATGGACGAAGTGCGCCGCCGCGTATCGCTCAAAGGCCTGCGCGACAGTACCGAGCTGCGCCAAGCCCT
GAAAGACGCGCTTTATGATTTGCTCGAACCTTTGCAGTCGCCCCTGCGGCTGCCAGACGACGGCCGCCCGTTCGTCATCA
TGATGGCGGGCATCAACGGTGCGGGCAAAACCACGTCCATCGGCAAGTTGGCGAAATATTTCCAGCAGCAGGGTAAAAGC
GTGGTGCTGGCAGCGGGCGACACCTTCCGTGCGGCGGCGCGCGAGCAGTTGCAGGAATGGGGGCGGCGCAACGGCGTAAC
CGTCATTTCGCAGGCCAAAGGCGATTCGGCGGCCGTCTGTTTCGATGCGGTGGAAGCGGCCAAGGCGCGCGGAATCGATG
TGGTACTGGCCGACACGGCCGGCCGTCTGCCCACCCAGCTGCATTTGATGGAAGAGATTAAAAAAGTCAAACGCGTATTG
CAGAAAACCATGCCCGACGCGCCGCATGAAATCATGGTGGTGCTCGATGCCAACATCGGCCAGAACGCGGTCAACCAAGT
CATCGCGTTTGACGATGCTCTGGGCGTAACCGGCCTGATTGTGACCAAGCTCGACGGCACGGCCAAAGGCGGCGTATTGG
CCGCACTGGCTTCAGCACGGCCTATTCCCGTGCACTACATCGGCGTGGGCGAGGGCATAGACGATTTGCGTCCCTTCGAT
GCCCGCGCTTTTGTCGATGCGCTGATTGAGGATTGA

Domains

Predicted by InterproScan.

SRP54-type protein, GTPase domain (SRP54)

(210-409)

SRP54-type protein, helical bundle domain (SRP54_N)

(126-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

67.064

100

0.684