Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ACEY2B_RS05900 Genome accession   NZ_CP169315
Coordinates   1202550..1203605 (+) Length   351 a.a.
NCBI ID   WP_374788289.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1197550..1208605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS05880 (ACEY2B_05880) - 1198811..1200490 (+) 1680 WP_200984571.1 FAD-dependent oxidoreductase -
  ACEY2B_RS05885 (ACEY2B_05885) arsB 1200487..1201539 (+) 1053 WP_021723429.1 ACR3 family arsenite efflux transporter -
  ACEY2B_RS05890 (ACEY2B_05890) - 1201548..1201751 (+) 204 WP_023189252.1 hypothetical protein -
  ACEY2B_RS05895 (ACEY2B_05895) - 1201828..1202103 (-) 276 WP_374788288.1 hypothetical protein -
  ACEY2B_RS05900 (ACEY2B_05900) xerS 1202550..1203605 (+) 1056 WP_374788289.1 tyrosine recombinase XerS Machinery gene
  ACEY2B_RS05905 (ACEY2B_05905) - 1203689..1203976 (+) 288 WP_200984567.1 hypothetical protein -
  ACEY2B_RS05910 (ACEY2B_05910) xerS 1204457..1205527 (+) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  ACEY2B_RS05915 (ACEY2B_05915) trmFO 1205572..1206915 (-) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 351 a.a.        Molecular weight: 40741.55 Da        Isoelectric Point: 9.5066

>NTDB_id=939013 ACEY2B_RS05900 WP_374788289.1 1202550..1203605(+) (xerS) [Lactococcus lactis strain IFLLLBEK1]
MSENHGYRYNVNKLMLEFPYYVNEFIQSKDTVPLSIASIYSYCLEFRKYLKWMNENNITNHANIKEITLKEMENVTKREL
EAFVLHERLRLESKCGSNTHTSALNRTIAAIKSLYNYLCEQTEDEDGNTYMIRNVSRLIHIRKKSETLHYRAAQLEGKLF
LGDETKAFLEFVEHEYEMSISNRAKTSFKKNKKRDLAILSLFLSSGLRCAELVGINLNDLNLETGKVRVMRKEGKKDVVP
IAHFSHKYITDYFEARSSIETEIQALFITDYNQQNKKISNASINKLVAKYSEAYKVRVTPHTLRHTFATRLYNVSHSQVL
VSNQLGHSSTKPTELYTHIVSAEAKDALRKL

Nucleotide


Download         Length: 1056 bp        

>NTDB_id=939013 ACEY2B_RS05900 WP_374788289.1 1202550..1203605(+) (xerS) [Lactococcus lactis strain IFLLLBEK1]
ATGTCAGAAAATCATGGTTATCGTTATAATGTAAATAAACTCATGCTTGAGTTTCCCTACTACGTCAATGAGTTTATCCA
GTCTAAGGACACTGTACCGCTGAGTATTGCCTCTATTTACTCTTACTGCTTGGAGTTTAGGAAATACTTGAAATGGATGA
ATGAAAATAACATAACGAACCATGCTAACATCAAAGAAATCACTTTGAAAGAAATGGAAAACGTAACGAAACGTGAGCTA
GAAGCTTTTGTACTTCACGAACGACTCCGTTTAGAATCAAAATGTGGTTCTAATACACATACATCAGCATTAAATCGAAC
CATTGCAGCGATTAAGAGTTTATATAATTATCTTTGTGAACAAACTGAGGATGAAGACGGAAATACATACATGATACGAA
ATGTTAGTCGTTTAATTCATATCCGAAAAAAGAGCGAAACTCTGCATTATCGTGCAGCACAGCTGGAAGGTAAACTATTC
CTAGGAGACGAAACTAAAGCATTTTTAGAGTTTGTTGAACATGAGTATGAAATGTCTATCAGTAATCGAGCGAAAACAAG
TTTCAAAAAAAATAAAAAAAGAGATTTAGCCATACTAAGCCTCTTTTTATCTTCTGGATTACGTTGTGCGGAACTTGTAG
GAATCAATCTCAATGATTTAAACCTTGAAACTGGTAAAGTAAGAGTGATGCGAAAAGAAGGCAAGAAAGATGTAGTGCCA
ATTGCCCACTTTTCACACAAATATATAACAGATTATTTTGAGGCAAGAAGTAGCATAGAAACTGAAATACAAGCACTTTT
TATTACTGATTACAACCAACAAAATAAAAAAATCTCGAATGCTTCGATAAATAAGCTAGTAGCGAAGTATTCAGAAGCCT
ATAAAGTTCGAGTGACACCTCATACTCTAAGGCATACATTCGCAACAAGACTATATAATGTCAGTCACTCTCAAGTCCTT
GTCAGCAACCAATTAGGACATTCTTCAACCAAACCAACTGAGTTATATACCCATATTGTCAGTGCTGAAGCTAAAGATGC
GTTAAGAAAGTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(183-339)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

45.559

99.43

0.453