Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ORY85_RS02930 Genome accession   NZ_CP145606
Coordinates   604243..605046 (-) Length   267 a.a.
NCBI ID   WP_274571477.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 599243..610046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS02910 (ORY85_02910) - 600279..601577 (+) 1299 WP_274571473.1 adenylosuccinate synthase -
  ORY85_RS02915 (ORY85_02915) - 602008..602799 (-) 792 WP_274571474.1 basic amino acid ABC transporter substrate-binding protein -
  ORY85_RS02920 (ORY85_02920) - 602872..603120 (-) 249 WP_274571475.1 NGO1151 family protein -
  ORY85_RS02925 (ORY85_02925) - 603197..603916 (+) 720 WP_274571476.1 hypothetical protein -
  ORY85_RS02930 (ORY85_02930) comL 604243..605046 (-) 804 WP_274571477.1 outer membrane protein assembly factor BamD Machinery gene
  ORY85_RS02935 (ORY85_02935) rluD 605045..606166 (+) 1122 WP_274571478.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ORY85_RS02940 (ORY85_02940) greB 606250..606738 (-) 489 WP_274571479.1 transcription elongation factor GreB -
  ORY85_RS02945 (ORY85_02945) prfA 606742..607818 (-) 1077 WP_274571480.1 peptide chain release factor 1 -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 31033.08 Da        Isoelectric Point: 8.5793

>NTDB_id=939002 ORY85_RS02930 WP_274571477.1 604243..605046(-) (comL) [Neisseria leonii strain 3986]
MKKILLVAALSVILGGCANTGTADKDAQITQDWPVERLYAEAQDELNSNNYTRAIKLYELLESRFPQGRFAQQAQLDTAY
AYYKDEEQAKALAAIERFQRLHPQHPSMDYALYLKGLVLFNEDQSFLNRLASQDWSDRDPQANRDAYRAFAELIQRYPDS
RYVPDATERMGKLVDALAGNEISIARYYARRGAYLAAAKRAQNILQNFRNTRFVEESLAIMVFSYQKMGRTQLADDTRRI
LAKNFPQSPFLEKEWSSEIIPWWRYWK

Nucleotide


Download         Length: 804 bp        

>NTDB_id=939002 ORY85_RS02930 WP_274571477.1 604243..605046(-) (comL) [Neisseria leonii strain 3986]
ATGAAAAAAATTCTTTTAGTTGCCGCATTAAGCGTGATTTTGGGCGGTTGCGCCAATACCGGTACAGCCGATAAAGATGC
GCAGATTACCCAAGACTGGCCTGTGGAACGCCTGTACGCCGAAGCGCAAGACGAGCTGAACAGTAACAATTATACGCGAG
CCATCAAGTTATATGAACTGCTGGAATCGCGCTTCCCGCAAGGCCGCTTTGCCCAGCAGGCCCAGCTGGATACCGCTTAT
GCGTATTATAAAGATGAAGAACAAGCCAAAGCCTTGGCCGCCATCGAACGTTTCCAGCGTCTGCACCCGCAACACCCGAG
CATGGATTATGCTTTGTATCTCAAAGGCTTGGTATTGTTCAATGAGGATCAGTCTTTCTTAAACCGTCTGGCCTCTCAGG
ACTGGTCCGACCGCGACCCGCAGGCCAACCGCGATGCCTACCGTGCGTTTGCCGAGCTGATCCAGCGTTATCCCGACAGC
AGATACGTTCCCGATGCCACCGAACGCATGGGCAAACTGGTCGATGCCCTGGCCGGTAACGAAATCTCGATTGCCCGCTA
TTATGCCCGTCGCGGAGCCTATCTGGCAGCAGCCAAACGCGCTCAAAACATCCTGCAGAACTTCCGCAATACCCGTTTTG
TCGAAGAGTCGCTGGCAATTATGGTGTTTTCGTATCAAAAAATGGGACGTACCCAATTGGCTGACGACACCCGCCGTATT
CTGGCGAAAAACTTCCCGCAAAGCCCGTTCTTGGAAAAAGAATGGTCGTCGGAAATCATTCCGTGGTGGCGTTACTGGAA
ATAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

71.805

99.625

0.715
  comL Neisseria gonorrhoeae MS11

71.805

99.625

0.715