Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   ORY85_RS00780 Genome accession   NZ_CP145606
Coordinates   145417..147642 (+) Length   741 a.a.
NCBI ID   WP_274572146.1    Uniprot ID   -
Organism   Neisseria leonii strain 3986     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 140417..152642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ORY85_RS00760 (ORY85_00760) - 141227..141811 (-) 585 WP_274570986.1 aminodeoxychorismate/anthranilate synthase component II -
  ORY85_RS00765 (ORY85_00765) typA 142097..143905 (-) 1809 WP_274572143.1 translational GTPase TypA -
  ORY85_RS00770 (ORY85_00770) bfr 144336..144800 (+) 465 WP_274572144.1 bacterioferritin -
  ORY85_RS00775 (ORY85_00775) bfr 144827..145300 (+) 474 WP_274572233.1 bacterioferritin -
  ORY85_RS00780 (ORY85_00780) comA 145417..147642 (+) 2226 WP_274572146.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ORY85_RS00785 (ORY85_00785) - 147833..149533 (+) 1701 WP_274572148.1 TolC family protein -
  ORY85_RS00790 (ORY85_00790) - 149540..151771 (+) 2232 WP_274572149.1 type I secretion system permease/ATPase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80611.88 Da        Isoelectric Point: 10.4915

>NTDB_id=938998 ORY85_RS00780 WP_274572146.1 145417..147642(+) (comA) [Neisseria leonii strain 3986]
MRRYLAAWPAGVLLSFGLADIPPLWLWTAAAVLLLPAALRFRRLRPLPVLLAGAAFAVWQVQTALDGQWPTERQGREVLL
VRVADLPQTDGRRTVFAADAWTEDKRYYRLRLSDYEGRDWPAGSYWRVSARLRPPVGEVNLRGFNREAWALANGLAGIGS
VGAARTAVDAEKRPFSDGLAAVRTAVSLRWQRWYGQGADNGVALMRALSVGEQGALSDEMWQVLRPLGLNHLVSISGLHV
SMVALLAAVFGRVLLKYAPHTPKRPRLWLLTVGLAAAWAYAALAGFAVPTVRAAAMLTVVALAWVRGGTASVWTAWWTAL
AGVLTLWPTAVLAAGTWLSFGLVGALLWGGSWRTGEQGGRLWRAQWAAGVMSAVMLGYGFAVLPLWSPAVNLPAIPWFSW
VLVPLALAASAIPWPPLQQAAVWLGEYTWRALAWLAEYAPEWSVAAAPWPLAAAAFCAVAVWLVPAGLGLRPWAAAVLLL
FVLYRPERPPSGRLNVTVLDSGQGLAVWLQTANRDLLFDTGTAAAAGGQVILALRAAGVRRLDALVFSHRDNDHDGGGQM
VRQAFVPDRVWAGQPEFYSGARHCSPASWQWDGVHFEWLTPEEPADSDNGKSCVLRAVAGGEAVLLTGDLDSRGEQRLIA
QYGSALFSQLLILGHHGSNTSSSGRFLNSVSPEYAVASSGYANAYGHPSPAVQNRVRAHGGRLLRTDLSGAWRFELGAGR
RLPVKVRPWRPYWQKKPFDWV

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=938998 ORY85_RS00780 WP_274572146.1 145417..147642(+) (comA) [Neisseria leonii strain 3986]
ATGCGGCGGTATCTGGCGGCGTGGCCGGCGGGGGTGTTGTTGTCGTTCGGTTTGGCGGACATACCGCCGCTTTGGCTGTG
GACGGCCGCCGCCGTGTTGCTGTTGCCTGCCGCTTTGCGCTTCCGCCGCCTGAGGCCGCTGCCCGTTTTGCTGGCCGGAG
CGGCGTTTGCGGTGTGGCAGGTTCAGACGGCCTTGGACGGGCAATGGCCGACGGAGCGGCAAGGGCGGGAAGTGTTGCTG
GTGCGGGTGGCGGACTTGCCGCAAACCGACGGGCGGCGGACGGTGTTTGCCGCCGACGCGTGGACGGAGGACAAGCGGTA
TTACCGTCTGCGCTTGTCGGATTATGAGGGGCGCGACTGGCCGGCGGGCAGCTATTGGCGGGTATCGGCGCGTTTGCGCC
CGCCGGTGGGCGAAGTGAATTTGCGCGGTTTCAACCGCGAGGCATGGGCTTTGGCCAACGGTTTGGCCGGTATCGGCAGC
GTGGGCGCGGCGCGGACGGCGGTTGATGCGGAAAAACGGCCGTTTTCAGACGGCCTGGCGGCCGTGCGGACGGCGGTCAG
TCTGCGCTGGCAGCGTTGGTACGGGCAGGGCGCGGACAACGGGGTGGCGCTGATGCGGGCGTTGAGTGTGGGCGAGCAGG
GGGCGTTGTCCGATGAAATGTGGCAGGTACTGCGCCCGCTGGGGCTGAATCATTTGGTGAGTATTTCGGGGCTGCATGTC
TCGATGGTGGCTCTGCTGGCTGCCGTATTCGGGCGGGTGCTGCTGAAATATGCGCCGCATACGCCCAAACGGCCGCGTCT
GTGGCTGCTGACCGTCGGTTTGGCGGCAGCATGGGCGTATGCGGCGTTGGCCGGTTTTGCCGTACCGACGGTACGTGCGG
CGGCCATGCTGACGGTGGTGGCGCTGGCATGGGTGCGGGGCGGCACGGCATCGGTGTGGACGGCTTGGTGGACGGCGTTG
GCGGGGGTGCTGACGCTGTGGCCGACGGCAGTTCTGGCGGCGGGGACATGGTTGTCTTTCGGTTTGGTGGGTGCTTTGCT
GTGGGGCGGTAGTTGGCGCACGGGCGAGCAGGGCGGAAGGTTGTGGCGGGCACAATGGGCGGCGGGCGTGATGTCGGCAG
TGATGCTGGGTTACGGATTTGCAGTGTTGCCGTTATGGAGTCCGGCGGTCAATCTGCCCGCGATACCGTGGTTTTCATGG
GTGTTGGTGCCTTTGGCACTGGCCGCTTCGGCAATACCGTGGCCGCCGCTGCAACAGGCGGCGGTTTGGTTGGGCGAATA
CACTTGGCGCGCGCTGGCATGGTTGGCCGAGTATGCGCCCGAGTGGTCGGTAGCCGCCGCACCTTGGCCGCTGGCGGCTG
CCGCATTTTGTGCCGTGGCGGTATGGCTGGTACCGGCGGGCTTGGGGTTGCGCCCGTGGGCGGCGGCGGTTTTGCTGCTG
TTTGTGCTGTACCGGCCGGAGCGGCCGCCGTCAGGCCGTCTGAATGTAACGGTGCTGGACAGCGGGCAGGGTTTGGCAGT
ATGGCTGCAAACGGCCAATCGGGATTTGTTGTTTGATACGGGAACGGCCGCCGCTGCCGGCGGTCAGGTCATACTGGCAT
TGCGTGCGGCCGGTGTGCGGCGTTTGGACGCGCTGGTGTTCTCGCACCGGGATAACGATCACGACGGCGGCGGGCAGATG
GTGCGGCAGGCATTTGTGCCCGATAGAGTGTGGGCGGGGCAGCCGGAGTTTTACAGCGGGGCACGGCACTGTTCGCCCGC
ATCGTGGCAGTGGGACGGTGTCCATTTCGAGTGGCTGACACCGGAGGAGCCGGCCGACAGCGATAACGGGAAGAGCTGTG
TGCTGCGGGCGGTGGCCGGCGGGGAGGCGGTGCTGCTGACCGGTGATTTGGACAGTCGGGGCGAGCAGCGGCTGATAGCG
CAATACGGTTCCGCGCTGTTCAGCCAGCTGCTGATTTTGGGACACCACGGCAGCAACACGTCGTCTTCGGGGCGTTTTTT
GAACAGTGTGTCGCCCGAATATGCCGTTGCGTCCAGCGGTTATGCCAATGCCTACGGTCACCCGTCGCCTGCCGTGCAGA
ACCGTGTGCGCGCCCACGGCGGCCGTCTGCTGCGTACCGACTTGTCCGGTGCATGGCGGTTCGAACTGGGGGCGGGAAGG
CGGTTGCCCGTCAAAGTGCGGCCGTGGCGGCCGTATTGGCAGAAAAAGCCGTTTGATTGGGTATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(23-163)

Metallo-beta-lactamase superfamily (Lactamase_B)

(502-675)

Competence protein (Competence)

(208-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

55.855

100

0.56
  comA Ralstonia pseudosolanacearum GMI1000

33.794

100

0.363