Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V5F87_RS03775 Genome accession   NZ_CP145595
Coordinates   800442..800837 (+) Length   131 a.a.
NCBI ID   WP_023351359.1    Uniprot ID   A0A7X9WCS4
Organism   Staphylococcus capitis strain kcgeb_sa     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 795442..805837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F87_RS03745 (V5F87_03745) atpD 795660..797072 (+) 1413 WP_002435865.1 F0F1 ATP synthase subunit beta -
  V5F87_RS03750 (V5F87_03750) - 797092..797496 (+) 405 WP_002435826.1 F0F1 ATP synthase subunit epsilon -
  V5F87_RS03755 (V5F87_03755) - 797637..797870 (+) 234 WP_002453705.1 DUF1146 family protein -
  V5F87_RS03760 (V5F87_03760) murA 797980..799245 (+) 1266 WP_002435807.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V5F87_RS03765 (V5F87_03765) fabZ 799290..799727 (+) 438 WP_023351358.1 3-hydroxyacyl-ACP dehydratase FabZ -
  V5F87_RS03770 (V5F87_03770) - 799808..800251 (-) 444 WP_338500193.1 YwpF-like family protein -
  V5F87_RS03775 (V5F87_03775) ssb 800442..800837 (+) 396 WP_023351359.1 single-stranded DNA-binding protein Machinery gene
  V5F87_RS03780 (V5F87_03780) - 801232..801957 (+) 726 WP_023351360.1 transglycosylase family protein -
  V5F87_RS03785 (V5F87_03785) tenA 802253..802942 (+) 690 WP_002435801.1 thiaminase II -
  V5F87_RS03790 (V5F87_03790) thiD 802935..803756 (+) 822 WP_002435497.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  V5F87_RS03795 (V5F87_03795) thiM 803749..804537 (+) 789 WP_023351361.1 hydroxyethylthiazole kinase -
  V5F87_RS03800 (V5F87_03800) thiE 804544..805182 (+) 639 WP_338500198.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15172.04 Da        Isoelectric Point: 5.2691

>NTDB_id=938923 V5F87_RS03775 WP_023351359.1 800442..800837(+) (ssb) [Staphylococcus capitis strain kcgeb_sa]
MLNKIVIVGRLTKDAQIYEKEDNKVATFCVATERNYKDENNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKTKHNEILSQNQYDEDTYHSDDIEIINI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=938923 V5F87_RS03775 WP_023351359.1 800442..800837(+) (ssb) [Staphylococcus capitis strain kcgeb_sa]
ATGTTAAACAAAATAGTAATAGTAGGAAGGTTGACTAAAGATGCTCAAATTTATGAGAAGGAGGATAATAAGGTCGCAAC
ATTTTGTGTAGCAACTGAAAGAAATTACAAAGATGAAAATAATGAAATATCAAGTGATTATTTATTGTGTAAAGCTTTCG
GCAAAACAGCAACCAATATCGAAAAATATACTAGTCAAGGTACATTAGTAGGTATAACAGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGACAAACGCATTTTGTAACCGAACTATATGTAGAAACAATTAAATTTATGTCTCCAAAAACTAAACA
TAATGAAATCCTCTCTCAAAATCAATACGATGAAGACACTTATCATTCAGACGACATTGAAATTATTAATATCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X9WCS4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

76.336

100

0.763
  ssb Staphylococcus aureus MW2

75.573

100

0.756