Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LBA42_RS08715 Genome accession   NZ_CP145437
Coordinates   1716049..1716870 (+) Length   273 a.a.
NCBI ID   WP_000601682.1    Uniprot ID   A0A4K3G7N8
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1711049..1721870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS08690 (LBA42_08690) - 1711405..1712013 (+) 609 WP_000083614.1 hypothetical protein -
  LBA42_RS08695 (LBA42_08695) - 1712006..1712416 (+) 411 WP_000595757.1 hypothetical protein -
  LBA42_RS08700 (LBA42_08700) ply 1712427..1713842 (+) 1416 WP_001284363.1 cholesterol-dependent cytolysin pneumolysin -
  LBA42_RS08705 (LBA42_08705) - 1714723..1715439 (+) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  LBA42_RS08710 (LBA42_08710) - 1715563..1716033 (+) 471 WP_000517879.1 MarR family winged helix-turn-helix transcriptional regulator -
  LBA42_RS08715 (LBA42_08715) rcrP 1716049..1716870 (+) 822 WP_000601682.1 ABC transporter permease Regulator
  LBA42_RS08720 (LBA42_08720) rcrQ 1716925..1717908 (+) 984 WP_223840522.1 ATP-binding cassette domain-containing protein Regulator
  LBA42_RS08725 (LBA42_08725) - 1717974..1718336 (+) 363 WP_000078805.1 DUF2200 domain-containing protein -
  LBA42_RS08730 (LBA42_08730) - 1718333..1718836 (+) 504 WP_000800942.1 phosphatase PAP2 family protein -
  LBA42_RS08735 (LBA42_08735) - 1718950..1719396 (+) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  LBA42_RS08740 (LBA42_08740) - 1719402..1720076 (+) 675 WP_000725750.1 membrane protein -
  LBA42_RS08745 (LBA42_08745) - 1720237..1720428 (+) 192 WP_000291826.1 cell wall-binding protein -
  LBA42_RS08750 (LBA42_08750) - 1720435..1720515 (+) 81 WP_223842529.1 hypothetical protein -
  LBA42_RS08755 (LBA42_08755) - 1720713..1721012 (+) 300 WP_001013974.1 DUF4651 domain-containing protein -
  LBA42_RS08760 (LBA42_08760) - 1721009..1721326 (+) 318 WP_000615769.1 thioredoxin family protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 30604.17 Da        Isoelectric Point: 5.9310

>NTDB_id=938733 LBA42_RS08715 WP_000601682.1 1716049..1716870(+) (rcrP) [Streptococcus pneumoniae strain HAC 39-1996]
MILLAILFTCFSVYLELEVPTYISKITDLLGSQETNLDELWQPASMMMGMSFLAFLSVVAVGFFASRVAASYTSRLRSDI
FNRVLDYSQTEIKKFSIPSLLTRTTNDITQVQMLITMGLQVVTRGSIMAIWAIGKILGHSEYWLWAVLVVVIVNVLMTTV
LMTLAFPKQSLIQGLTDKLNSITRESLTGIRVVRAYNAEDYQNEKFAAVNDELTRLNLFVNRLMAILNPIMMGISSGLSV
AIYWIGAYVINDAAPIARLPLFSDMIIFMSYAM

Nucleotide


Download         Length: 822 bp        

>NTDB_id=938733 LBA42_RS08715 WP_000601682.1 1716049..1716870(+) (rcrP) [Streptococcus pneumoniae strain HAC 39-1996]
ATGATTTTACTAGCCATTCTCTTTACTTGCTTTTCGGTCTATCTAGAGTTGGAAGTGCCGACCTATATCTCGAAAATTAC
GGATTTGCTAGGTAGTCAAGAAACTAATTTAGATGAGTTGTGGCAGCCGGCAAGCATGATGATGGGAATGTCCTTTCTTG
CCTTCTTGTCCGTAGTTGCAGTTGGATTTTTTGCATCCCGAGTGGCGGCTTCTTATACTAGTAGGCTGAGAAGTGATATT
TTTAACCGAGTTTTGGATTACTCGCAGACAGAGATTAAGAAATTTTCAATTCCTAGCCTCTTGACGCGTACTACCAATGA
CATTACTCAAGTTCAAATGTTGATTACTATGGGCTTGCAAGTGGTAACGCGTGGTTCAATTATGGCTATCTGGGCTATTG
GGAAGATTTTAGGTCATTCAGAATACTGGCTCTGGGCCGTACTTGTGGTAGTGATTGTCAACGTCCTGATGACGACCGTT
TTGATGACGCTAGCCTTTCCAAAACAGTCCTTGATTCAGGGGTTGACAGATAAACTGAACAGTATCACTCGTGAGAGTTT
AACAGGTATTCGTGTCGTTCGTGCCTACAATGCAGAGGATTATCAAAATGAAAAATTTGCAGCAGTAAATGATGAATTGA
CCCGTTTGAATTTGTTTGTCAACCGTCTTATGGCTATTTTGAATCCTATCATGATGGGGATTTCAAGTGGTTTGAGTGTA
GCGATTTACTGGATTGGGGCCTATGTGATTAACGACGCTGCTCCGATAGCGCGTCTGCCTCTCTTTAGTGACATGATTAT
TTTCATGTCTTATGCCATGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-271)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4K3G7N8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

56.842

100

0.593