Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Regulator
Locus tag   LBA42_RS08600 Genome accession   NZ_CP145437
Coordinates   1692053..1692673 (+) Length   206 a.a.
NCBI ID   WP_000839905.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   fratricide immunity (predicted from homology)   
Competence regulation

Genomic Context

Location: 1687053..1697673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS08580 (LBA42_08580) - 1687349..1687981 (-) 633 WP_000571415.1 ABC transporter ATP-binding protein -
  LBA42_RS08585 (LBA42_08585) - 1687983..1689998 (-) 2016 WP_000732393.1 DUF1430 domain-containing protein -
  LBA42_RS08590 (LBA42_08590) - 1690448..1690618 (-) 171 WP_000742181.1 PhrA family quorum-sensing system peptide -
  LBA42_RS08595 (LBA42_08595) - 1690807..1691670 (+) 864 Protein_1669 helix-turn-helix transcriptional regulator -
  LBA42_RS08600 (LBA42_08600) comM 1692053..1692673 (+) 621 WP_000839905.1 hypothetical protein Regulator
  LBA42_RS08605 (LBA42_08605) tsaE 1692759..1693202 (+) 444 WP_000288232.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  LBA42_RS08610 (LBA42_08610) - 1693192..1693710 (+) 519 WP_000455534.1 GNAT family N-acetyltransferase -
  LBA42_RS08615 (LBA42_08615) - 1693718..1694734 (+) 1017 WP_000239278.1 LCP family protein -
  LBA42_RS08620 (LBA42_08620) cinA 1694819..1696075 (+) 1257 WP_000642705.1 competence/damage-inducible protein A Machinery gene
  LBA42_RS08625 (LBA42_08625) recA 1696130..1697296 (+) 1167 WP_001085463.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23499.67 Da        Isoelectric Point: 9.8826

>NTDB_id=938729 LBA42_RS08600 WP_000839905.1 1692053..1692673(+) (comM) [Streptococcus pneumoniae strain HAC 39-1996]
MKSMRILFLLALIQISLSSCFLWKECILSFKQSTAFFIGSMVFVSGICAGVNYLYTCKQEVHSVLASKKSVKLFYSMLLL
INLLGAVLVLSDNLFIKNTLQQELVDFLLPSFFFLFGLDLLIFLPLKKYVRDFLAMLDRKKTVLVTILATLLFLRNPMTI
VSLLIYIGLGLFFAAYLVPNSVKKEVSFYGHIFRDLVLVIVTLIFF

Nucleotide


Download         Length: 621 bp        

>NTDB_id=938729 LBA42_RS08600 WP_000839905.1 1692053..1692673(+) (comM) [Streptococcus pneumoniae strain HAC 39-1996]
ATGAAATCAATGAGAATCTTATTTTTGTTAGCTTTAATTCAAATCAGTTTGAGTAGCTGTTTCCTATGGAAGGAATGCAT
CTTGTCCTTTAAACAAAGTACAGCTTTTTTCATCGGAAGCATGGTTTTCGTTTCAGGAATCTGTGCTGGAGTAAATTATC
TTTATACCTGTAAGCAAGAAGTCCATAGTGTCCTAGCCAGTAAGAAGTCGGTGAAGCTTTTTTACAGTATGTTACTCTTA
ATTAATTTGTTAGGAGCTGTTCTTGTTTTGTCAGATAACTTGTTCATCAAAAATACGCTGCAGCAAGAATTAGTTGACTT
TTTATTGCCATCCTTCTTTTTCCTATTTGGGCTAGATTTGCTGATTTTTTTACCCTTGAAAAAATACGTGCGCGATTTTC
TTGCTATGCTAGACAGAAAAAAGACAGTGTTGGTGACTATTTTAGCAACACTTCTTTTCTTAAGAAATCCAATGACCATT
GTCTCACTTCTGATTTATATTGGATTGGGCTTGTTTTTTGCAGCCTATCTTGTCCCAAATTCGGTTAAGAAGGAAGTTTC
CTTTTATGGTCATATTTTCCGAGATCTTGTATTGGTCATTGTTACGCTCATTTTCTTTTAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Streptococcus pneumoniae D39

99.515

100

0.995
  comM Streptococcus pneumoniae R6

99.515

100

0.995
  comM Streptococcus pneumoniae TIGR4

99.515

100

0.995
  comM Streptococcus mitis NCTC 12261

38.974

94.66

0.369
  comM Streptococcus mitis SK321

38.974

94.66

0.369